Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I23
(437 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF231130-1|AAL56659.1| 1800|Homo sapiens NUP196 nucleoporin prot... 31 1.7
AF071077-1|AAD22396.1| 1638|Homo sapiens Nup98-Nup96 precursor s... 31 1.7
AF071076-1|AAD22395.1| 1712|Homo sapiens Nup98-Nup96 precursor p... 31 1.7
Y15758-1|CAC17466.1| 683|Homo sapiens LB1 protein. 30 4.0
EF560732-1|ABQ59042.1| 683|Homo sapiens CKAP2 protein protein. 30 4.0
BC130296-1|AAI30297.1| 682|Homo sapiens cytoskeleton associated... 30 4.0
BC010901-1|AAH10901.1| 161|Homo sapiens CKAP2 protein protein. 30 4.0
AY062262-1|AAL47213.1| 494|Homo sapiens tumor-associated microt... 30 4.0
AY062261-1|AAL47212.1| 682|Homo sapiens tumor-associated microt... 30 4.0
AL359513-5|CAH71660.2| 682|Homo sapiens cytoskeleton associated... 30 4.0
AL359513-4|CAH71661.2| 494|Homo sapiens cytoskeleton associated... 30 4.0
AK022982-1|BAB14345.1| 682|Homo sapiens protein ( Homo sapiens ... 30 4.0
AK001611-1|BAA91788.1| 349|Homo sapiens protein ( Homo sapiens ... 30 4.0
AJ429398-1|CAD22295.1| 683|Homo sapiens cytoskeleton associated... 30 4.0
AF177227-1|AAG33675.1| 572|Homo sapiens CTCL tumor antigen se20... 30 4.0
>AF231130-1|AAL56659.1| 1800|Homo sapiens NUP196 nucleoporin protein.
Length = 1800
Score = 31.1 bits (67), Expect = 1.7
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +2
Query: 152 STLQIK-ANSPSAEKFKKLELNIRSKNPSPDTYSNSIIMDADGRVYKSESTIVLSKAHPV 328
ST ++K A P A + L++ + K P+P S S ++ GRV + +S +V PV
Sbjct: 883 STKKLKTAPLPPASQTTPLQMALNGK-PAPPPQSQSPEVEQLGRVVELDSDMVDITQEPV 941
Query: 329 LD--LQYVNPETNKP 367
LD L+ PE +P
Sbjct: 942 LDTMLEESMPEDQEP 956
>AF071077-1|AAD22396.1| 1638|Homo sapiens Nup98-Nup96 precursor splice
variant 1 protein.
Length = 1638
Score = 31.1 bits (67), Expect = 1.7
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +2
Query: 152 STLQIK-ANSPSAEKFKKLELNIRSKNPSPDTYSNSIIMDADGRVYKSESTIVLSKAHPV 328
ST ++K A P A + L++ + K P+P S S ++ GRV + +S +V PV
Sbjct: 883 STKKLKTAPLPPASQTTPLQMALNGK-PAPPPQSQSPEVEQLGRVVELDSDMVDITQEPV 941
Query: 329 LD--LQYVNPETNKP 367
LD L+ PE +P
Sbjct: 942 LDTMLEESMPEDQEP 956
>AF071076-1|AAD22395.1| 1712|Homo sapiens Nup98-Nup96 precursor
protein.
Length = 1712
Score = 31.1 bits (67), Expect = 1.7
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +2
Query: 152 STLQIK-ANSPSAEKFKKLELNIRSKNPSPDTYSNSIIMDADGRVYKSESTIVLSKAHPV 328
ST ++K A P A + L++ + K P+P S S ++ GRV + +S +V PV
Sbjct: 883 STKKLKTAPLPPASQTTPLQMALNGK-PAPPPQSQSPEVEQLGRVVELDSDMVDITQEPV 941
Query: 329 LD--LQYVNPETNKP 367
LD L+ PE +P
Sbjct: 942 LDTMLEESMPEDQEP 956
>Y15758-1|CAC17466.1| 683|Homo sapiens LB1 protein.
Length = 683
Score = 29.9 bits (64), Expect = 4.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 315 RLIRFWICNTLIPKLTSPAES 377
+L+++WIC LI +TSP E+
Sbjct: 459 KLVKYWICLALIEPITSPIEN 479
>EF560732-1|ABQ59042.1| 683|Homo sapiens CKAP2 protein protein.
Length = 683
Score = 29.9 bits (64), Expect = 4.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 315 RLIRFWICNTLIPKLTSPAES 377
+L+++WIC LI +TSP E+
Sbjct: 459 KLVKYWICLALIEPITSPIEN 479
>BC130296-1|AAI30297.1| 682|Homo sapiens cytoskeleton associated
protein 2 protein.
Length = 682
Score = 29.9 bits (64), Expect = 4.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 315 RLIRFWICNTLIPKLTSPAES 377
+L+++WIC LI +TSP E+
Sbjct: 458 KLVKYWICLALIEPITSPIEN 478
>BC010901-1|AAH10901.1| 161|Homo sapiens CKAP2 protein protein.
Length = 161
Score = 29.9 bits (64), Expect = 4.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 315 RLIRFWICNTLIPKLTSPAES 377
+L+++WIC LI +TSP E+
Sbjct: 125 KLVKYWICLALIEPITSPIEN 145
>AY062262-1|AAL47213.1| 494|Homo sapiens tumor-associated
microtubule-associated protein splice variant protein.
Length = 494
Score = 29.9 bits (64), Expect = 4.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 315 RLIRFWICNTLIPKLTSPAES 377
+L+++WIC LI +TSP E+
Sbjct: 458 KLVKYWICLALIEPITSPIEN 478
>AY062261-1|AAL47212.1| 682|Homo sapiens tumor-associated
microtubule-associated protein protein.
Length = 682
Score = 29.9 bits (64), Expect = 4.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 315 RLIRFWICNTLIPKLTSPAES 377
+L+++WIC LI +TSP E+
Sbjct: 458 KLVKYWICLALIEPITSPIEN 478
>AL359513-5|CAH71660.2| 682|Homo sapiens cytoskeleton associated
protein 2 protein.
Length = 682
Score = 29.9 bits (64), Expect = 4.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 315 RLIRFWICNTLIPKLTSPAES 377
+L+++WIC LI +TSP E+
Sbjct: 458 KLVKYWICLALIEPITSPIEN 478
>AL359513-4|CAH71661.2| 494|Homo sapiens cytoskeleton associated
protein 2 protein.
Length = 494
Score = 29.9 bits (64), Expect = 4.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 315 RLIRFWICNTLIPKLTSPAES 377
+L+++WIC LI +TSP E+
Sbjct: 458 KLVKYWICLALIEPITSPIEN 478
>AK022982-1|BAB14345.1| 682|Homo sapiens protein ( Homo sapiens
cDNA FLJ12920 fis, clone NT2RP2004594. ).
Length = 682
Score = 29.9 bits (64), Expect = 4.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 315 RLIRFWICNTLIPKLTSPAES 377
+L+++WIC LI +TSP E+
Sbjct: 458 KLVKYWICLALIEPITSPIEN 478
>AK001611-1|BAA91788.1| 349|Homo sapiens protein ( Homo sapiens
cDNA FLJ10749 fis, clone NT2RP3001915. ).
Length = 349
Score = 29.9 bits (64), Expect = 4.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 315 RLIRFWICNTLIPKLTSPAES 377
+L+++WIC LI +TSP E+
Sbjct: 125 KLVKYWICLALIEPITSPIEN 145
>AJ429398-1|CAD22295.1| 683|Homo sapiens cytoskeleton associated
protein 2 protein.
Length = 683
Score = 29.9 bits (64), Expect = 4.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 315 RLIRFWICNTLIPKLTSPAES 377
+L+++WIC LI +TSP E+
Sbjct: 459 KLVKYWICLALIEPITSPIEN 479
>AF177227-1|AAG33675.1| 572|Homo sapiens CTCL tumor antigen se20-10
protein.
Length = 572
Score = 29.9 bits (64), Expect = 4.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 315 RLIRFWICNTLIPKLTSPAES 377
+L+++WIC LI +TSP E+
Sbjct: 422 KLVKYWICLALIEPITSPIEN 442
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,487,376
Number of Sequences: 237096
Number of extensions: 1177102
Number of successful extensions: 2843
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2840
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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