Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I23
         (437 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase fa...    31   0.34 
At3g13900.1 68416.m01756 haloacid dehalogenase-like hydrolase fa...    29   1.4  
At5g53380.1 68418.m06633 hypothetical protein                          29   1.8  
At3g50060.1 68416.m05473 myb family transcription factor contain...    28   2.4  
At1g63810.1 68414.m07221 nucleolar RNA-associated family protein...    28   2.4  
At1g12120.1 68414.m01404 expressed protein contains Pfam domain ...    28   2.4  
At3g21710.2 68416.m02739 expressed protein                             28   3.2  
At3g21710.1 68416.m02738 expressed protein                             28   3.2  
At2g36350.1 68415.m04461 protein kinase, putative similar to pro...    27   4.2  
At4g35560.1 68417.m05053 expressed protein                             27   5.5  
At5g20960.2 68418.m02492 aldehyde oxidase 1 (AAO1) identical to ...    27   7.3  
At5g20960.1 68418.m02491 aldehyde oxidase 1 (AAO1) identical to ...    27   7.3  
At4g28630.1 68417.m04093 ABC transporter family protein identica...    27   7.3  
At4g26340.1 68417.m03787 F-box family protein contains F-box dom...    27   7.3  
At3g45970.1 68416.m04974 expansin family protein (EXPL1) similar...    27   7.3  
At1g52590.1 68414.m05937 expressed protein                             27   7.3  
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /...    27   7.3  

>At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|O43520], Mus musculus [SP|P70704]; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1240

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 21/98 (21%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
 Frame = +2

Query: 149 DSTLQIKANSPSAEKFKKLELNIRSKNPSPDTYSNSIIMDADGRVYKSESTIVLSKAHPV 328
           D+TL ++ +    E F+     I+ ++P+P+ Y+    ++ DG+VY  +   +L +   +
Sbjct: 211 DATLALEKD----ESFQNFSGTIKCEDPNPNLYTFVGNLECDGQVYPLDPNQILLRDSKL 266

Query: 329 LDLQYVNPE---TNKPSRIYVKGSSLSSTQGKIELKVD 433
            +  YV      T   +++    +   S + +IE ++D
Sbjct: 267 RNTAYVYGVVVFTGHDTKVMQNSTKSPSKRSRIEKRMD 304


>At3g13900.1 68416.m01756 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|Q9Y2Q0], Mus musculus [SP|P70704]; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1243

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/85 (20%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
 Frame = +2

Query: 188 EKFKKLELNIRSKNPSPDTYSNSIIMDADGRVYKSESTIVLSKAHPVLDLQYVNPE---T 358
           + F+     I+ ++P+P+ Y+    ++ DG+VY  + + +L +   + +  YV      T
Sbjct: 219 DTFQSFSGTIKCEDPNPNLYTFVGNLEYDGQVYPLDPSQILLRDSKLRNTSYVYGVVVFT 278

Query: 359 NKPSRIYVKGSSLSSTQGKIELKVD 433
              +++    +   S + +IE ++D
Sbjct: 279 GHDTKVMQNSTKSPSKRSRIEKRMD 303


>At5g53380.1 68418.m06633 hypothetical protein
          Length = 483

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +2

Query: 188 EKFKKLELNIRSKNPSPDTYSNSIIMDADGRV--YKSESTI-VLSKAHPVLDLQYVNPET 358
           E++ K ++N+      PD     I  D DG V  Y S  T+  L K+ P+ D+  +N +T
Sbjct: 71  ERWMKTKVNVEDHVFVPDIDLQEINKDGDGFVDDYVSRLTLSPLDKSKPLWDIHILNVKT 130

Query: 359 NKPSRIYV 382
           +    + V
Sbjct: 131 SDAEAVGV 138


>At3g50060.1 68416.m05473 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain;
           identical to cDNA MYB-related protein (1107 bp)
           GI:1263096
          Length = 301

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 107 KTSSISVDSSFAPHDSTLQIKANSPSAEKFKKLELNIRSKNPSPDT 244
           K  S+S DS+FAP D+ L +   SP+      ++++  S  PSP +
Sbjct: 128 KRRSVSFDSAFAPVDTGLYMSPESPNG-----IDVSDSSTIPSPSS 168


>At1g63810.1 68414.m07221 nucleolar RNA-associated family protein /
            Nrap family protein contains Pfam profile PF03813: Nrap
            protein; similar to nucleolar RNA-associated protein
            alpha (GI:18539461) [Mus musculus]
          Length = 1053

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +2

Query: 17   PFVMDFN--YKRDSQCDKNNNFVEVKAKYGKGKTSSISVDSSFAPHDSTLQI-KANSPSA 187
            P ++D N  + R+ + + N+NF+  +  Y + K +  S     AP+D   +   + SP+ 
Sbjct: 808  PLIVDINNDFGRNDEKEINDNFMSSRKGYEEDKQNISSAMFLAAPYDKASEAWTSTSPNL 867

Query: 188  EKFKKLELNIRS 223
             + K+L    RS
Sbjct: 868  LEQKRLVAYARS 879


>At1g12120.1 68414.m01404 expressed protein contains Pfam domain
           PF05904: Plant protein of unknown function (DUF863)
          Length = 483

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
 Frame = +2

Query: 68  NNFVEVKAKYGKGKTSSISVDSSFAPHDSTLQIKANSPSAEKFKKLELNIRSKNPSP--- 238
           NN  EV A    GK +   V     P  + +  +  +  A+      + +R+ +  P   
Sbjct: 99  NNVKEVSATSWTGKRNPRIVIDLEEPPPTWVSHRETTEHAQASVSY-VTVRNPDTKPSFF 157

Query: 239 DTYSNSIIMDADGRVYKSESTIVLSKAHPVLDL 337
           D  S++I+MD D  + + +S    SK   +LDL
Sbjct: 158 DRISSNILMDVDQSLVEDDSDKTTSKESSLLDL 190


>At3g21710.2 68416.m02739 expressed protein
          Length = 211

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 86  KAKYGKGKTSSISVDSSFAPHDSTLQIKANSPSAEKFKKLELNIRSKNPSPDTYSNSIIM 265
           K K+G+G+T  I  D S    + T     NSP    F+ ++   R      D  S+S +M
Sbjct: 97  KLKFGRGRTKKICEDDSL---EDTASSPVNSPKVSHFEHIQTPPRK---IEDYVSSSFVM 150


>At3g21710.1 68416.m02738 expressed protein
          Length = 175

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 86  KAKYGKGKTSSISVDSSFAPHDSTLQIKANSPSAEKFKKLELNIRSKNPSPDTYSNSIIM 265
           K K+G+G+T  I  D S    + T     NSP    F+ ++   R      D  S+S +M
Sbjct: 97  KLKFGRGRTKKICEDDSL---EDTASSPVNSPKVSHFEHIQTPPRK---IEDYVSSSFVM 150


>At2g36350.1 68415.m04461 protein kinase, putative similar to
           protein kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 949

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = +2

Query: 149 DSTLQIKANSPSAEKFKKLELNIRSKNPSPDTYSNSIIMDADGRVYKSESTIVLSKAHPV 328
           D+  QI+AN  S+EKF   + ++ SKN   D YS+S  M  +  + +       +K H  
Sbjct: 484 DADEQIRANPTSSEKF---DFSLSSKNSLGD-YSSSTSMSEESNLSRFSCG---NKPHMS 536

Query: 329 LDLQY 343
           +D+++
Sbjct: 537 MDVRW 541


>At4g35560.1 68417.m05053 expressed protein 
          Length = 917

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 311 SKAHPVLDLQYVNPETNKPSRIYVKGSSLSSTQ 409
           S+  P+  L++V  E  K SR+YV GSS +S Q
Sbjct: 133 SEKIPIASLKWVYAE-GKASRVYVIGSSSNSLQ 164


>At5g20960.2 68418.m02492 aldehyde oxidase 1 (AAO1) identical to
            aldehyde oxidase AAO1 from Arabidopsis thaliana
            [gi:3172023] isoform contains a GA-donor splice site at
            intron 10
          Length = 1368

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 159  RVLSWGANEESTEIELVLPLP 97
            ++LSW +N++ T++   LP+P
Sbjct: 1319 QILSWNSNKQGTDMYFELPVP 1339


>At5g20960.1 68418.m02491 aldehyde oxidase 1 (AAO1) identical to
            aldehyde oxidase AAO1 from Arabidopsis thaliana
            [gi:3172023] isoform contains a GA-donor splice site at
            intron 10
          Length = 1368

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 159  RVLSWGANEESTEIELVLPLP 97
            ++LSW +N++ T++   LP+P
Sbjct: 1319 QILSWNSNKQGTDMYFELPVP 1339


>At4g28630.1 68417.m04093 ABC transporter family protein identical
           to half-molecule ABC transporter ATM1 GI:9964117 from
           [Arabidopsis thaliana]
          Length = 678

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 278 RVYKSESTIVLSKAHPVLDLQY-VNPETNKPSRIYVKGSSLSST 406
           R  +S S  VLS  H  LDL+Y +N ET   +RI  +GS   +T
Sbjct: 184 RTIRSVSRKVLSHLHD-LDLRYHLNRETGALNRIIDRGSRAINT 226


>At4g26340.1 68417.m03787 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 419

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 216 FAQRIHLQTHTAILL*WTLMDVSINPNPPSYSLRLI 323
           F+Q +HL   T +   W L+   +  +P   SL+LI
Sbjct: 288 FSQLVHLNLSTVVKGWWDLLTSMLQDSPKLQSLKLI 323


>At3g45970.1 68416.m04974 expansin family protein (EXPL1) similar to
           cim1 induced allergen, Glycine max, EMBL:U03860;
           expansin-like gene, PMID:11641069,
           www.bio.psu.edu/expansins
          Length = 265

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 44  RDSQCDKNNNFVEVKAKYGKGKTSSISVD 130
           R  +  K  N++E+K  Y  G+T  +S+D
Sbjct: 152 RVEEASKKPNYLEIKLLYQGGQTEVVSID 180


>At1g52590.1 68414.m05937 expressed protein
          Length = 172

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 146 HDSTLQIKANSPSAEKFKKLELNIRSKNPSPDTYSNSIIMDADGRVYKSESTIVLSK 316
           HD    I+  +  +E  KKL L       +PD  S+ ++++ D    KSE+ + + K
Sbjct: 75  HDRNRSIRFEALQSEAGKKLLLR---SGRAPDDISSVVLVENDRSYIKSEAVLKIMK 128


>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
            pentatricopeptide (PPR) repeat-containing protein
            contains Pfam profiles:  PF00271 helicase conserved
            C-terminal domain, PF01535 PPR repeat, PF00270: DEAD/DEAH
            box helicase
          Length = 1145

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 22/89 (24%), Positives = 41/89 (46%)
 Frame = +2

Query: 2    ARGNDPFVMDFNYKRDSQCDKNNNFVEVKAKYGKGKTSSISVDSSFAPHDSTLQIKANSP 181
            ++G DP +M FN   +  C  N   ++   +  + + S   V ++   +++ +Q    S 
Sbjct: 897  SKGCDPDIMTFNILINGYCKANR--IDDGLELFR-EMSLRGVIANTVTYNTLVQGFCQSG 953

Query: 182  SAEKFKKLELNIRSKNPSPDTYSNSIIMD 268
              E  KKL   + S+   PD  S  I++D
Sbjct: 954  KLEVAKKLFQEMVSRRVRPDIVSYKILLD 982


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,485,340
Number of Sequences: 28952
Number of extensions: 186980
Number of successful extensions: 608
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)