Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I22
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ...    29   0.53 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    27   1.6  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.1  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    26   3.7  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    25   4.9  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    25   4.9  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   4.9  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    25   6.5  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   6.5  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    25   8.6  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    25   8.6  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   8.6  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    25   8.6  

>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 363 VLTVIDDPKYKRTLYKLCNN 422
           VLT IDDP     +YKLC +
Sbjct: 89  VLTAIDDPSLSSEIYKLCKS 108


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 423 YYCTVCTKSFYIWDHQ 376
           Y C +CTK+FY  +HQ
Sbjct: 26  YKCPLCTKAFYRLEHQ 41


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/40 (27%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = +3

Query: 363 VLTVIDDPKYKRTLYKLCNN---NIVTFKKLLEGNDDGVM 473
           ++ ++ + +YK +++++CNN   +  T    L+GN D V+
Sbjct: 320 IMAILTNNRYKSSMHRVCNNSGSDRYTIPFFLQGNIDYVV 359


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 417 CTVCTKSFYIWD 382
           C +CTKSFY W+
Sbjct: 68  CYMCTKSFYDWE 79


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +3

Query: 207 AEVCIADELNDECRVFDQNERYNVYLEETLWTRECAEKIIRNY 335
           A+  + D L+      D  +++N++   T W++  A+ I+ NY
Sbjct: 173 ADSVLWDVLHYRIPTLDGYQQHNLWKNFTRWSQYFADNIVSNY 215


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 420 NNIVTFKKLLEGNDDGVMRNDLI 488
           N+I T K +L+  +DGV + DL+
Sbjct: 335 NHISTVKSVLQSIEDGVSKEDLL 357


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +3

Query: 204 KAEVCIADELNDECRVFDQNERYNVYLEETLWTRECAEKIIRNYNGSESLTCFVLT--VI 377
           KA  CI  +L+D C++  ++   + + +++LWT       + N+  + S++  +LT  V 
Sbjct: 103 KAFECI--DLDDNCKLIWESTVLSDHQKQSLWTEFIF--FLGNFKITNSMSAAMLTFKVY 158

Query: 378 DDPK 389
           DD K
Sbjct: 159 DDSK 162


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 399 TLYKLCNNNIVTFKKLLEGND 461
           T+Y+LC  N +  KKL+EG +
Sbjct: 290 TIYELCCCNKLFLKKLVEGGE 310


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 90  LQAKSRVTPSKCSEMFREY 146
           L+ K+  TPS+CS  F +Y
Sbjct: 554 LERKNMSTPSQCSSCFEQY 572


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 234 NDECRVFDQNERYNVYLEETLWTRECAEKI 323
           NDE   F    ++ +YLE+TL + +  E +
Sbjct: 229 NDEYTPFTPKNQFVIYLEDTLASLDVVESL 258


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 90  LQAKSRVTPSKCSEMFREY 146
           L+ K   TP++CS  F+EY
Sbjct: 590 LERKKLSTPTQCSSCFQEY 608


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 90  LQAKSRVTPSKCSEMFREY 146
           L+ K   TP++CS  F+EY
Sbjct: 590 LERKKLSTPTQCSSCFQEY 608


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 126 NICSVLHATSLVTSVISHRPFSGA 55
           N C  LH   L   ++SH+P+ GA
Sbjct: 162 NYCGSLHY--LAPEIVSHKPYRGA 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,880,114
Number of Sequences: 5004
Number of extensions: 34749
Number of successful extensions: 82
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)