Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I22
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0101 + 745924-747343,748077-748174                               33   0.17 
07_03_1171 - 24514096-24514228,24514399-24514446,24514495-245148...    29   1.6  
01_06_0285 + 28183108-28183209,28183495-28183754,28183950-281842...    28   3.7  
02_02_0087 - 6650570-6652021                                           28   5.0  

>02_01_0101 + 745924-747343,748077-748174
          Length = 505

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 16/71 (22%), Positives = 37/71 (52%)
 Frame = +3

Query: 279 YLEETLWTRECAEKIIRNYNGSESLTCFVLTVIDDPKYKRTLYKLCNNNIVTFKKLLEGN 458
           Y +  +W+R       ++++   ++    + V+D+ +Y   L K+CN+   T ++LL G+
Sbjct: 348 YWKANIWSRPIPAGSWKDWHRECTVDVTDIAVVDNVRYSELLPKICNDPEETLRRLLTGH 407

Query: 459 DDGVMRNDLIN 491
               M  ++I+
Sbjct: 408 PTLGMDGNVIS 418


>07_03_1171 -
           24514096-24514228,24514399-24514446,24514495-24514886,
           24515637-24515849,24516245-24516414,24516515-24516629
          Length = 356

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 225 DELNDECRV-FDQNERY-NVYLEETLWTRECAEKIIRNYNGSESLTCFVLTV 374
           D +N+ C    D + RY NV ++  + ++   EK++  YN SES    V+T+
Sbjct: 144 DFINESCWTPLDLSNRYSNVMMDAYVSSKTLTEKLLLRYNESESRAFEVVTL 195


>01_06_0285 +
           28183108-28183209,28183495-28183754,28183950-28184237,
           28184385-28184495,28184815-28184905,28185146-28185214,
           28185627-28185716,28185887-28185937,28186040-28186258,
           28186371-28186490
          Length = 466

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +3

Query: 231 LNDECRVFDQNERYNVYLE-ETLWTRECA--EKIIRNYNGSESL 353
           L D C V D  +  +   E   LW  E    EK+IR Y G ESL
Sbjct: 313 LLDSCHVEDTEDSLDRKSEVHLLWKEELTWNEKLIRRYQGRESL 356


>02_02_0087 - 6650570-6652021
          Length = 483

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 348 SLTCFVLTVIDDPKYKRTLYKLCNNNIVTFKKLLEGNDDGVMR 476
           S   F+LTV+ D +Y+    + C + I    KLL+ +DD  +R
Sbjct: 218 SAWAFLLTVVHD-RYEAEEGESCKDKIALLAKLLDDHDDRGVR 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,599,379
Number of Sequences: 37544
Number of extensions: 204861
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)