Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I22
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41946| Best HMM Match : L71 (HMM E-Value=3.8)                       30   1.3  
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)                  29   1.7  
SB_30598| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)           27   8.9  
SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  

>SB_41946| Best HMM Match : L71 (HMM E-Value=3.8)
          Length = 216

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +3

Query: 225 DELNDECRVFDQNERYNVYLEETLWTRECAEKIIRNYNGSESLTCFVLTVIDDPKYKRT 401
           D  N  CR  +Q +     +  +  +R C E+I+ ++  +E +T       D PK +RT
Sbjct: 61  DATNKYCRTTEQPKTRRRNVPASPNSRRCDEQILSHHQTAEDVTNKCSCTADQPKTRRT 119


>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
          Length = 1089

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = +3

Query: 222 ADELNDECRVFDQNERYNVYLEETLWTRECAEKIIRNYNGSESLTCFVLTVIDDPKYKRT 401
           A E  D  R     +R +++ E+    +ECAE+I  N    E +  F  +++DDP    +
Sbjct: 343 AKEKLDRVRTDGPRDRRHLH-EKVHEAKECAEEIEDNEPAVEEVIEFADSLLDDPNIDES 401

Query: 402 LYKLCNNNIVTFK 440
             +L    + T++
Sbjct: 402 NKELIRYYVTTYQ 414


>SB_30598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 21  IAVVIEDDCDTLRQRTADAILPMLQAKSRVTPSKCSEM 134
           I   ++DD D +R   A A+LP+ ++  ++ P+K  E+
Sbjct: 408 IISALQDDDDDVRAIAASALLPIAESIVQLAPNKVQEL 445


>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3610

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +3

Query: 384 PKYKRTLYKLCNNNIVTFKKLLEGNDDGVMRNDLIN 491
           P  + T  K+ ++ ++T++ +LEGND+G  R D ++
Sbjct: 728 PGGRVTTVKMTSSRLMTYR-ILEGNDEGYFRMDSLS 762


>SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1232

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 426 CYYCTVCTKSFYIWDHQ 376
           CYYCTVC K +    H+
Sbjct: 265 CYYCTVCKKGYNNKQHK 281


>SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)
          Length = 1119

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 426 CYYCTVCTKSF 394
           CYYCTVC K +
Sbjct: 209 CYYCTVCKKGY 219


>SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1376

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -3

Query: 154  CSTYSRNISEHLLGVTRDFACNIGNIASAVLWRNVSQ 44
            CS YS      L   +R F C IG IAS +L RN S+
Sbjct: 1300 CSEYSVEELPQLPERSR-FTCGIGAIASGLLERNPSE 1335


>SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 222 ADELNDECRVFDQNERYNVYLEETLWTRECAEKIIRNYNGSESLTCFVLTVIDDP 386
           A E  D  R     +R +++ E+    +ECAE+I  N    E +  F  +++DDP
Sbjct: 42  AKEKLDRVRTDGPRDRRHLH-EKVHEAKECAEEIEDNEPAVEEVIEFADSLLDDP 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,336,772
Number of Sequences: 59808
Number of extensions: 270802
Number of successful extensions: 2606
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2606
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)