Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I22
         (507 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC104829-1|AAI04830.1|  517|Homo sapiens syntrophin, gamma 1 pro...    29   9.3  
BC075072-1|AAH75072.1|  517|Homo sapiens syntrophin, gamma 1 pro...    29   9.3  
AK000132-1|BAA90963.1|  392|Homo sapiens protein ( Homo sapiens ...    29   9.3  

>BC104829-1|AAI04830.1|  517|Homo sapiens syntrophin, gamma 1
           protein.
          Length = 517

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -3

Query: 154 CSTYSRNISEHLLGVTRDFACN---IGNIASAVLWR 56
           C TY+  +  HL+G+T DF+           AVLWR
Sbjct: 398 CKTYACVLESHLMGLTIDFSTGFICFDAATKAVLWR 433


>BC075072-1|AAH75072.1|  517|Homo sapiens syntrophin, gamma 1
           protein.
          Length = 517

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -3

Query: 154 CSTYSRNISEHLLGVTRDFACN---IGNIASAVLWR 56
           C TY+  +  HL+G+T DF+           AVLWR
Sbjct: 398 CKTYACVLESHLMGLTIDFSTGFICFDAATKAVLWR 433


>AK000132-1|BAA90963.1|  392|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20125 fis, clone COL06152. ).
          Length = 392

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 184 DTSKAALSSHCSTYSRNISEHLLGVTRDFACNIGNI 77
           +T KA LS HC+ +  N  +HL  V+  FA N+ ++
Sbjct: 244 NTIKAFLSKHCADHPNNWDDHLSAVS--FAFNVTHL 277


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,210,042
Number of Sequences: 237096
Number of extensions: 1126619
Number of successful extensions: 2568
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2568
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)