Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I22
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006714-13|ABB88218.1|  269|Caenorhabditis elegans F-box a prot...    31   0.48 
Z77670-4|CAB01249.2|  439|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF325178-1|AAG49583.1|  439|Caenorhabditis elegans CEH-32 protein.     28   4.5  
AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical ...    27   5.9  

>AC006714-13|ABB88218.1|  269|Caenorhabditis elegans F-box a protein
           protein 76 protein.
          Length = 269

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 9/62 (14%)
 Frame = +3

Query: 210 EVCIADELNDECRVF---DQNERYNV--YLEETLWTRECAEKI--IRN--YNGSESLTCF 362
           +V + DEL+D C VF   DQ +R N+  YL  TL   E  E +  +RN  +NG ++L   
Sbjct: 74  DVILKDELDDICVVFESEDQEKRRNLVKYLASTLKNLENLENLCTVRNLEFNGLKALEIL 133

Query: 363 VL 368
           +L
Sbjct: 134 LL 135


>Z77670-4|CAB01249.2|  439|Caenorhabditis elegans Hypothetical
           protein W05E10.3 protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 27  VVIEDDCDTLRQRTADAILPMLQAKSRVTPSKCSEMFRE 143
           V +E D +  ++R+  +I  +L  KS V+PS+CS    E
Sbjct: 352 VEVEADIEPPKKRSKLSIDEILNIKSEVSPSQCSPCSNE 390


>AF325178-1|AAG49583.1|  439|Caenorhabditis elegans CEH-32 protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 27  VVIEDDCDTLRQRTADAILPMLQAKSRVTPSKCSEMFRE 143
           V +E D +  ++R+  +I  +L  KS V+PS+CS    E
Sbjct: 352 VEVEADIEPPKKRSKLSIDEILNIKSEVSPSQCSPCSNE 390


>AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical
           protein VC5.2 protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 20  DSGRDRGRLRHIAPENGRCDITDVTSEVACN 112
           D    RG  +   P+NG C    VT+ + CN
Sbjct: 523 DPTMGRGCTKCPCPKNGECSYNTVTNRIECN 553


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,448,885
Number of Sequences: 27780
Number of extensions: 198955
Number of successful extensions: 573
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)