Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I22
         (507 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22790.1 68416.m02873 kinase interacting family protein simil...    29   1.8  
At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04...    28   3.1  
At2g25420.1 68415.m03045 transducin family protein / WD-40 repea...    28   3.1  
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative        28   3.1  
At1g52490.1 68414.m05925 F-box family protein contains F-box dom...    28   3.1  
At5g49710.3 68418.m06156 expressed protein similar to unknown pr...    27   7.3  
At5g49710.2 68418.m06154 expressed protein similar to unknown pr...    27   7.3  
At3g16940.1 68416.m02165 calmodulin-binding protein similar to a...    27   9.6  
At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein...    27   9.6  
At1g10110.1 68414.m01140 F-box family protein contains Pfam PF00...    27   9.6  

>At3g22790.1 68416.m02873 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1694

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 24   AVVIEDDCDTLRQRTADAILPMLQAKSRVTPSKCSEMFREYVEQ 155
            A+ +E DC T  Q+ A   +P+ +    +   KCS    EY  Q
Sbjct: 896  ALQVEADCKTADQKIAKERIPVSRVLGEINELKCSLSSAEYETQ 939


>At5g37420.1 68418.m04502 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 579

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 357 CFVLTVIDDPKYKRTLYKLCNNNIVTFKKLLE 452
           C V+ +IDDP Y  +L ++    I + +KL+E
Sbjct: 431 CAVIHLIDDPDYAESLKEIAYKMIDSVRKLVE 462


>At2g25420.1 68415.m03045 transducin family protein / WD-40 repeat
           family protein contains Pfam PF00400: WD domain, G-beta
           repeat (3 repeats)
          Length = 717

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 345 ESLTCFVLTVIDDPKYKRTLYKLCNNNIVTF 437
           E L C +L  + + KYK TL+KL     V F
Sbjct: 176 EDLICLILQFLYEAKYKNTLHKLEQETKVFF 206


>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
          Length = 746

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 423 YYCTVCTKSFYIWDHQ*LLVQNR*DFHSHY 334
           Y+CT+C  +F+I   + ++V  +   HSHY
Sbjct: 604 YHCTICEINFHIECIKAVIVPRKIKSHSHY 633


>At1g52490.1 68414.m05925 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 423

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = +3

Query: 252 FD-QNER-YNVYLEETLWTRECAEKIIRNYNG 341
           FD ++ER Y+V   ETLW+ +C E+ + N+ G
Sbjct: 281 FDVKSERFYHVRTPETLWSPKCTERGLFNHQG 312


>At5g49710.3 68418.m06156 expressed protein similar to unknown
           protein (pir||T05575)
          Length = 235

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = +3

Query: 207 AEVCIADELNDECRVFDQNERYNVYLEETLWTRECAEKIIRNYNGSESLTCFVLTVIDDP 386
           A+V     L ++   +D     +++ +ET+  RE    ++R  + +E + CF+ T +   
Sbjct: 100 AQVSAPQHLAEDSSSWDVVSEDDLWDDETMAQREEDYVLVREEDIAEGIACFMATYLQSL 159

Query: 387 KYKRTL 404
           K  + L
Sbjct: 160 KQTKDL 165


>At5g49710.2 68418.m06154 expressed protein similar to unknown
           protein (pir||T05575)
          Length = 196

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = +3

Query: 207 AEVCIADELNDECRVFDQNERYNVYLEETLWTRECAEKIIRNYNGSESLTCFVLTVIDDP 386
           A+V     L ++   +D     +++ +ET+  RE    ++R  + +E + CF+ T +   
Sbjct: 100 AQVSAPQHLAEDSSSWDVVSEDDLWDDETMAQREEDYVLVREEDIAEGIACFMATYLQSL 159

Query: 387 KYKRTL 404
           K  + L
Sbjct: 160 KQTKDL 165


>At3g16940.1 68416.m02165 calmodulin-binding protein similar to
           anther ethylene-upregulated protein ER1 GI:11612392 from
           [Nicotiana tabacum]; contains Pfam profile: PF00612 IQ
           calmodulin-binding motif (3 copies)
          Length = 852

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 255 RILDTRH*VRPRYRLPLCNLTERATRAKPRCRRTALRIRGTFRNI 121
           R  DTR  +   YR+     T +  R     RR A+RI+  FR +
Sbjct: 700 RKYDTRRKIEAAYRIQCRFQTWKIRREYLNMRRQAIRIQAAFRGL 744


>At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein
           contains Pfam profile: PF01068 ATP dependent DNA ligase
           domain
          Length = 1417

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 276 VYLEETLWTRECAEKIIRNYNGSESLTCFVLTVIDDPK 389
           V+++ +   +E  ++ I   NGSESL  +  ++ID+ K
Sbjct: 633 VHIDASEAYKEVTDQFIDIVNGSESLRDYAASIIDEAK 670


>At1g10110.1 68414.m01140 F-box family protein contains Pfam
           PF00646: F-box domain; similar to  F-box protein family,
           AtFBX7 (GI:20197899) [Arabidopsis thaliana]
          Length = 332

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 257 VEYSTLVIKFVRDTDFRFVI*QSERHEQSRAVV 159
           +EYS    KF R  ++ F +   +RH  SRA+V
Sbjct: 56  LEYSNTGTKFERPGNYVFHLLFDDRHRTSRAIV 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,688,873
Number of Sequences: 28952
Number of extensions: 177380
Number of successful extensions: 439
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)