Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I21
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    33   0.016
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    27   1.0  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    27   1.4  
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    27   1.8  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   2.4  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.2  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    26   3.2  
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    26   3.2  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    25   4.2  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    25   7.3  
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   9.7  

>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 33.5 bits (73), Expect = 0.016
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 198 VIVEKKLYEPALKEEANSSKQLTVAIQKGNSNSGTTSNLIETAKVEQINTQKTGH 362
           V+ ++ L+  A+    N  KQL  AI   + + G +SN+I T K +  +    GH
Sbjct: 141 VLKKRSLFNDAISIVPNKKKQLVSAISTNSDSQGASSNIIPTPKYD--SNSPAGH 193


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 4/135 (2%)
 Frame = +3

Query: 57  YRKNPAHFREYS---HPH-LEAILDLYDGSGAYPIPEKYSLQRVMIAEQLDVIVEKKLYE 224
           Y  N  + R+++   HP+ L   +D++  S  + + EK S    M+   L++  +++LYE
Sbjct: 353 YENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPF-VGEKVS---EMLISMLNICSKEELYE 408

Query: 225 PALKEEANSSKQLTVAIQKGNSNSGTTSNLIETAKVEQINTQKTGHNALSKIATKVSEVN 404
             LKE A +  +     +  N N       IE  +  QI   K    A+ +I+   S + 
Sbjct: 409 TDLKESAPTQHKQPAPSE--NENKADQEIDIEARR--QIIKNKI--MAIGRISRVFSVLR 462

Query: 405 RNENKVSRNRGESST 449
                VS  +  S T
Sbjct: 463 EERESVSELKNVSGT 477


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = +3

Query: 186 EQLDVIVEKKLYEPALKEEANSSKQLTVAIQKGNSNSGT-----TSNLIETAKVEQINTQ 350
           ++LDV+ +     P  K     + +  + +   NSN GT     TSN++   K E + + 
Sbjct: 180 DKLDVVRDILGKFPREKFATTQALEFCIELIPSNSNKGTALQYITSNILPEVKNENVISF 239

Query: 351 KTGHNALSKIA 383
             G N LS  A
Sbjct: 240 GDGQNDLSMFA 250


>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 240 EANSSKQLTVAIQKGNSNSGTTSNLIETAKVEQIN 344
           E N+S   TVA Q G   SGT   ++++  +   N
Sbjct: 382 ETNASPSFTVARQGGTLASGTGPEIVDSLSIYNFN 416


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 285 NSNSGTTSNLIETAKVEQINTQKTGHNALSKIATKVSEVNRN 410
           N   G +S  ++  +VEQI TQ+ G NA    +++  + +RN
Sbjct: 103 NQQGGKSS--LQKKEVEQIETQEGGDNAKGSPSSENKDSDRN 142


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 246 NSSKQLTVAIQKGNSNSGTTSNLIETAKVEQIN-TQKTGHNALSKIATKVS 395
           +SSK    ++ +  SNS T S+ IE+A +E ++   +   ++++ I T+ S
Sbjct: 208 SSSKSAGFSLFESASNSFTPSSFIESANMESLSIPSRRRPSSIAPIGTRPS 258


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 186 EQLDVIVEKKLYEPALKEEANSSKQLTVAIQKGNSNSGTTSNLIETA 326
           E+LDV  ++ LY P   +E +  K+L   IQ   S  G T +++ T+
Sbjct: 153 EELDVYDDESLYHPQTHKE-DCGKRLQTRIQPEES-VGKTGSVMSTS 197


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 15/97 (15%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
 Frame = +3

Query: 168 QRVMIAEQLDVIVEKKLYE---PALKEEANSSKQLTVAIQKGNSNSGTTSNLIETAKVEQ 338
           Q  +    ++V+ +KK+YE     L++++ + +Q  +  +   +   T   + ETA+  +
Sbjct: 58  QTALKQRAMNVLRQKKIYESQLQQLQQQSFNMEQAAMTTESLKNTMATVQTMQETARQLK 117

Query: 339 INTQKTGHNALSKIATKVSEVNRNENKVSRNRGESST 449
             ++      + K+  ++ +      +++   G++ T
Sbjct: 118 SQSKNVSIEKIEKLQDEIQDYMDAAGELNEVLGQNMT 154


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 24/107 (22%), Positives = 45/107 (42%)
 Frame = +3

Query: 72  AHFREYSHPHLEAILDLYDGSGAYPIPEKYSLQRVMIAEQLDVIVEKKLYEPALKEEANS 251
           A+F  Y+  +  +I    DG+    IP   S+ +    + +D I E   Y+ +   +   
Sbjct: 364 AYFYSYNVVYEASIQTATDGNDFANIPRYVSMVQSYALKTIDAIFELSAYDMSRCSD--- 420

Query: 252 SKQLTVAIQKGNSNSGTTSNLIETAKVEQINTQKTGHNALSKIATKV 392
                V    G + S +   LI  AK ++++T       L+ + TK+
Sbjct: 421 ----HVLFHAGFA-SASLLRLIYAAKTKEVDTSIVQPKVLNDLVTKI 462


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +3

Query: 177 MIAEQL--DVIVEKKLYEPALKEEA 245
           MIAE L   V+V+  LY P  KEEA
Sbjct: 500 MIAESLASQVLVDALLYAPCEKEEA 524


>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 343 IHRKQDIMHYQKLQQKFQR*IEMRIRYPEIEVNLQQAKV 459
           I R ++ +  +KLQQ+ +  I   +   E+E+N Q+ K+
Sbjct: 212 IQRLKEAIASEKLQQEERSQIIKSLMEEELEINEQEEKI 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,931
Number of Sequences: 5004
Number of extensions: 36544
Number of successful extensions: 154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)