Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I21
         (459 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0765 - 20421813-20423174,20423591-20423771,20423862-204241...    37   0.007
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093...    30   1.0  
03_05_0997 + 29565311-29565664,29566134-29566298,29566572-295666...    29   1.8  
12_02_0106 + 13654686-13655789                                         27   9.6  
02_04_0466 - 23149906-23150046,23150129-23150279,23151684-231517...    27   9.6  

>10_08_0765 - 20421813-20423174,20423591-20423771,20423862-20424117,
            20424768-20425095,20425218-20426156,20427015-20427761,
            20428517-20428789
          Length = 1361

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 28/79 (35%), Positives = 43/79 (54%)
 Frame = +2

Query: 68   SSPFSRVQSSASGSNTRFI*W*WSIPYSGEIQSSKGHDSRTA*CHSGEEVI*TGFKRRSE 247
            SS  SR    A+G N+R + W    P SG  + S GHDSR   CH+ E++  T F++R  
Sbjct: 918  SSGSSRHDIIAAG-NSRPMRW-SHFPGSGNTRRSNGHDSRLNVCHTKEDMHRTHFQQR-- 973

Query: 248  *FKAINGSHSKGEFKQRYY 304
              K+ +G +S+     +Y+
Sbjct: 974  --KSYSGDYSQVAPPNQYW 990


>05_07_0329 -
           29308867-29308932,29309040-29309159,29309245-29309364,
           29309566-29310123,29310199-29310258,29310839-29310904,
           29310993-29311103,29311167-29311257,29311349-29311449,
           29311534-29311641,29311737-29314205
          Length = 1289

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 204 VEKKLYEPALKEEANSSKQLTVAIQK--GNSNSGTTSN 311
           V KK+ EP  K+E NS  Q TVA  K   NSN G T +
Sbjct: 630 VAKKVAEPVQKQE-NSKAQSTVATVKKVANSNKGETED 666


>03_05_0997 +
           29565311-29565664,29566134-29566298,29566572-29566661,
           29566763-29566891,29568141-29568272,29568904-29568969,
           29569326-29569505,29569664-29569693,29569744-29569839,
           29569959-29570096,29571060-29571142,29571447-29571484,
           29571568-29571788,29572491-29572538
          Length = 589

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +3

Query: 201 IVEKKLYEPALKEEANSSKQLTVAIQKGNSNSGTTSNLIETAKVEQINTQKTG 359
           + ++K  + A ++E  +  + TVA + G  N G T++  E A   +   ++ G
Sbjct: 1   MAKRKQRKAATEQEVENHDEATVAAEAGPENDGHTAHAAEEAAAAEEGVEREG 53


>12_02_0106 + 13654686-13655789
          Length = 367

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +3

Query: 93  HPHLEAILDLYDGSGAYPIPEKYSLQRVMIAEQLDVIVEKKLYEPALKEEANSSKQL 263
           HPH+  ++D   G+GA    E Y +   ++   LD+ + ++  + A +  A    +L
Sbjct: 113 HPHIVQLIDHGRGAGAATGQEDYIVME-LVGPSLDLTIRQRGDDAAARRYAEGDVRL 168


>02_04_0466 -
           23149906-23150046,23150129-23150279,23151684-23151785,
           23151893-23152110,23152203-23152325,23152863-23152991,
           23153191-23153274,23154009-23154104,23154735-23154816,
           23155047-23155117,23155269-23155363,23156090-23156276,
           23156586-23156757,23157800-23157948,23158578-23158701,
           23158836-23158991,23159101-23159247,23160470-23160489
          Length = 748

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
 Frame = +3

Query: 186 EQLDVIVEKKLYEPALKEEANSSKQL--TVAIQKGNSNSGTTSNLIETAKVEQINTQKTG 359
           EQ   IVE+++ + A  EEA   +Q      I++  +     +     AK+  +  QK  
Sbjct: 215 EQKSQIVERRIRDDAALEEAKRKEQAMKDEKIRQERAKQEAEARQKAAAKL-AVEAQKAA 273

Query: 360 HNALSKIATKVSEVNRNENKVSRNRGESSTG 452
             A +K A +  +     +K S+N   +  G
Sbjct: 274 AEAAAKEAAEAQKAAAEVSKSSQNSQNNVAG 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,800,162
Number of Sequences: 37544
Number of extensions: 203492
Number of successful extensions: 482
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)