Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I21
(459 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16) 42 2e-04
SB_22259| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_24029| Best HMM Match : Kinesin (HMM E-Value=2.10195e-44) 32 0.20
SB_36367| Best HMM Match : UVR (HMM E-Value=1.2) 30 1.1
SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085) 29 1.4
SB_9386| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_41132| Best HMM Match : EGF_CA (HMM E-Value=0.00043) 28 3.2
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_45465| Best HMM Match : HEAT (HMM E-Value=0.018) 28 3.2
SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_25160| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_22060| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25) 27 7.5
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 27 7.5
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17) 27 7.5
SB_18790| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_10322| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_18589| Best HMM Match : Filament (HMM E-Value=0.024) 27 9.9
>SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16)
Length = 501
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/34 (55%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +3
Query: 3 NEETPKRVKKE---CDYGDKCYRKNPAHFREYSH 95
+E KR K E C YG KCYRKNP H EY H
Sbjct: 29 SEGKRKRSKDEKPLCKYGSKCYRKNPVHMEEYRH 62
>SB_22259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 41.5 bits (93), Expect = 3e-04
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3
Query: 6 EETPKRVKKECDYGDKCYRKNPAHFREYSHP 98
+E R KK C YG KCY+ NP H + + HP
Sbjct: 292 DEASDRKKKVCMYGSKCYQTNPDHMKNFLHP 322
>SB_24029| Best HMM Match : Kinesin (HMM E-Value=2.10195e-44)
Length = 534
Score = 32.3 bits (70), Expect = 0.20
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Frame = +3
Query: 87 YSHPHLEAILDLYDGSGAYPIPEKYSLQRVMIAEQLDVIVEKKLYEPA-LKEEANSSKQL 263
Y + E I DL + +G Y + + Q + E L +V + + A L E+ N K+L
Sbjct: 52 YYEIYQEMIYDLLNPNG-YELRVRQHPQLGIYVEGLAELVVQNAEDIARLFEQGNRVKKL 110
Query: 264 TVAIQKGNSNSGTTSNLIETAKVEQINTQKTGHNALSKI-ATKVSEVNRNEN 416
A S + S+ I T VEQ N +KT SKI +S +N+N
Sbjct: 111 ASA---DKSPKASRSDSIFTINVEQRNKEKTNSGMRSKINLIDLSGTEKNDN 159
>SB_36367| Best HMM Match : UVR (HMM E-Value=1.2)
Length = 169
Score = 29.9 bits (64), Expect = 1.1
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Frame = +3
Query: 6 EETPKRVKKECDYGDKCYRKNPAHFREYSHPHLEAILDLYDGSGAYPIPEKYS-LQRVM- 179
EE+PK + CD+ D + +R S + + D S +KY LQ M
Sbjct: 34 EESPKSTPRNCDFSDGIGLRKIKGYRTRSEYEI-----IGDASEKETPEQKYQRLQHEMR 88
Query: 180 -IAEQLDVIVEKKLYEPALKEEANSSKQLTVAIQKGNSNSGTTSNLIE 320
+AE+LD I KKL L +A K ++ NS T + L E
Sbjct: 89 ELAEELDQI--KKL-PSKLVHQAACVKLISCPFSSTGENSATAAPLTE 133
>SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 758
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 358 PVFCVFICSTFAVSIRLLVVPLFEFPF*MATVNCF-ELFASSFKA 227
P F F CST ++ ++ + F FP+ A ++C+ +L A+S A
Sbjct: 481 PYFAPFSCSTDLIANSIIAIAGFAFPY-FAPISCYTDLIANSIIA 524
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 358 PVFCVFICSTFAVSIRLLVVPLFEFPF*MATVNCF 254
P F F CST ++ ++ + F FP+ A +C+
Sbjct: 581 PYFAPFSCSTDLIANSIIAIASFAFPY-FAPFSCY 614
>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +3
Query: 246 NSSKQLTVAIQKGNSNSGTTSNLIETAKVEQINTQK---TGHNALSKIATKVSEVNRNEN 416
N+S + + NSNS + SN T V T T HN+ S + S N N N
Sbjct: 514 NNSNSNSNSNSNSNSNSNSNSNSTVTVTVTATATATATVTVHNSSSSSSNSNSNSNSNSN 573
Query: 417 KVSRNRGESST 449
S + S++
Sbjct: 574 SNSNSNSNSNS 584
>SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)
Length = 350
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -3
Query: 355 VFCVFICSTFAVSIRLLVVPLFEFPF*MATVNCFELFASSFKAGSYNFFSTM 200
V V++ S V++ ++V+PLF+F F CF +F S ++ +T+
Sbjct: 277 VLAVWLGSVVTVTV-VMVIPLFKFKFRADRAICFAVFKSREVDAGFSVLTTL 327
>SB_9386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +3
Query: 327 KVEQINTQKTGHNALSKIATK--VSEVNRNENKVSRNRGESS 446
KV Q N KT H + S+I T+ +E+N E+ + +N GE++
Sbjct: 79 KVGQ-NGNKTKHESNSEITTRNTTNEINGTESNLPKNHGEAT 119
>SB_41132| Best HMM Match : EGF_CA (HMM E-Value=0.00043)
Length = 307
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 174 PFEDCISPE*GMLHYHHINLVLLPDADDCT 85
P+ +SP+ M +Y ++ + PD D+CT
Sbjct: 10 PYLMILSPQIPMSNYSYLMCTIFPDVDECT 39
>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1268
Score = 28.3 bits (60), Expect = 3.2
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +3
Query: 153 EKYSLQRVMIAEQLDVIVEKKLYEPALKEEANSSKQLTVAIQKGNSNSGTTSNLIETAKV 332
EK + + V EQ I + +Y K+ + KQ T++ K ++ + + ++ +
Sbjct: 646 EKNNDRNVKSTEQERNIAKVTVYNKKAKKSVSIDKQ-TISSDKHKKSTHMNNEVKKSVSL 704
Query: 333 EQINTQKTG-HNALSKIATKVSEVN 404
+ + T HN ++ A KV EVN
Sbjct: 705 KIKKEKNTEQHNKIASAADKVEEVN 729
>SB_45465| Best HMM Match : HEAT (HMM E-Value=0.018)
Length = 301
Score = 28.3 bits (60), Expect = 3.2
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +3
Query: 153 EKYSLQRVMIAEQLDVIVEKKLYEPALKEEANSSKQLTVAIQKGNSNSGTTSNLIETAKV 332
E S+ ++ + +L +++ + A ++ + V K L ETAKV
Sbjct: 33 ENASVDKLSVVNKLVDLLQNAKENKVQERAARATGFIMVGDPKFTHRQKLIDGLCETAKV 92
Query: 333 EQINTQKTGHNALSKI-ATKVSEVNRN 410
QI Q T ALS + A + SE R+
Sbjct: 93 RQIELQFTVGEALSCVGAGRESEAARD 119
>SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1249
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +3
Query: 285 NSNSGTTSNLIETAKVEQINTQKTGHNALSKIATKVSEVNRNENKVSRNRGESS 446
N+N+ TT+N + N K +N S S N N + S N SS
Sbjct: 57 NNNNTTTNNNNSNSSNNNNNNNKNNNNNNSNNNNNNSNTNNNNSNNSNNNNSSS 110
>SB_25160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = +3
Query: 276 QKGNSNSGTTSNLIETAKVEQINTQKTGHNALSKIATKVSEVNRNENKVSRN 431
+K N+N+ ++N Q N N S K E NRN N + N
Sbjct: 77 KKNNNNNNNSNNNNNNNNRNQNNINSNNKNINSNNDNKACEKNRNNNDSNNN 128
>SB_22060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 842
Score = 27.5 bits (58), Expect = 5.6
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Frame = +3
Query: 126 DGSGAYPIPEKYSLQRVMIAEQLDVIVEKKLYEPALKEEANSSKQLTVAIQKG------- 284
DGS IP+K+S + E E K P KEE KG
Sbjct: 442 DGSILLKIPKKFSEDLIEDVESKKKKAESKKQMPRPKEEEEDEDDADSRDLKGKHLPRLS 501
Query: 285 NSNSGTTSNLIETAKVEQINTQKTGHNALSKI 380
+ NS T S+ + + K + T++ A++++
Sbjct: 502 SGNSPTISSWVISGKKNDVTTERPTTPAITEV 533
>SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)
Length = 1597
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 6 EETPKRVKKECDYGDKCYR 62
EE P + K C YGD C R
Sbjct: 163 EEKPVQTSKPCRYGDSCTR 181
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 27.1 bits (57), Expect = 7.5
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 84 EYSHPHLEAILDLYDGSGAYP--IPEKYSLQRVMIAEQLDVIVEK 212
E SH + + D+Y P I E SLQ V +AE D IV K
Sbjct: 841 EPSHSGSDELEDIYRVPSPIPKLISENTSLQDVAVAESFDDIVPK 885
>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 27.1 bits (57), Expect = 7.5
Identities = 31/115 (26%), Positives = 47/115 (40%)
Frame = +3
Query: 45 GDKCYRKNPAHFREYSHPHLEAILDLYDGSGAYPIPEKYSLQRVMIAEQLDVIVEKKLYE 224
G Y+K R+ S H + ILD G +Y E L++V EQ I+++
Sbjct: 23 GHGSYKKEHRGLRKVSRKHAQRILDETAGHASYK-KEHRGLRKVS-REQAQRIIDETAGH 80
Query: 225 PALKEEANSSKQLTVAIQKGNSNSGTTSNLIETAKVEQINTQKTGHNALSKIATK 389
+ K+E +++ S L ETA NT K H L K++ K
Sbjct: 81 GSYKKEYRGLRKV--------SRKHARRILDETA---GHNTYKKEHRGLRKVSRK 124
>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
Length = 1248
Score = 27.1 bits (57), Expect = 7.5
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 84 EYSHPHLEAILDLYDGSGAYP--IPEKYSLQRVMIAEQLDVIVEK 212
E SH + + D+Y P I E SLQ V +AE D IV K
Sbjct: 617 EPSHSGSDELEDIYRVPSPIPKLISENTSLQDVAVAESFDDIVPK 661
>SB_18790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 362 MSCFLCIYLFYLCSFYKITSSTAV 291
+ C I++FY CSF + + TA+
Sbjct: 81 LQCNFTIFVFYTCSFVTVMTLTAI 104
>SB_10322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 6 EETPKRVKKECDYGDKCYRKNPAHF 80
EE+PK + CD G + R+N +F
Sbjct: 39 EESPKSTPRNCDNGQRESRRNTCNF 63
>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1311
Score = 27.1 bits (57), Expect = 7.5
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +3
Query: 210 KKLYEPALKEEANSSKQLTVAIQKGNSNSGTTS-NLIETAKVEQINTQKTGHNALSKIAT 386
KK + +++ E N+ K Q NSN +E K EQ+ +KT N
Sbjct: 867 KKSKKKSVEHEKNAEKT-----QAENSNVADVDLRRLERMKKEQVKNEKTAENTEENTEK 921
Query: 387 KVSEVNRNENKVSRNRGESST 449
+ + ++K R+ E T
Sbjct: 922 RAKKKREMKDKKKRSSEEQKT 942
>SB_18589| Best HMM Match : Filament (HMM E-Value=0.024)
Length = 324
Score = 26.6 bits (56), Expect = 9.9
Identities = 20/85 (23%), Positives = 40/85 (47%)
Frame = +3
Query: 192 LDVIVEKKLYEPALKEEANSSKQLTVAIQKGNSNSGTTSNLIETAKVEQINTQKTGHNAL 371
L E K+ L+ E N +K T Q+ + +NL + + E+ + +K +NA
Sbjct: 173 LQAQTETKVQSATLELE-NKNKNCTKLEQELQQKASAITNLEQKSHNEKSSLEKQLYNAK 231
Query: 372 SKIATKVSEVNRNENKVSRNRGESS 446
+ + K ++++ + + R ESS
Sbjct: 232 AALEGKEAQLSTFQKDLETLREESS 256
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,021,827
Number of Sequences: 59808
Number of extensions: 249293
Number of successful extensions: 745
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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