Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I21
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    27   0.097
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    27   0.097
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   2.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   4.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.5  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 27.1 bits (57), Expect = 0.097
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 84  LENGLDSFYNIYLRNRTPFSLFSVFPR 4
           L+  L + YN+ L N +PFS++S   R
Sbjct: 458 LKQILSAAYNVELHNSSPFSIYSFLER 484


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 27.1 bits (57), Expect = 0.097
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 84  LENGLDSFYNIYLRNRTPFSLFSVFPR 4
           L+  L + YN+ L N +PFS++S   R
Sbjct: 496 LKQILSAAYNVELHNSSPFSIYSFLER 522


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 385 VAIFDSALCPVFCVFIC 335
           V++F +A+ P+F  FIC
Sbjct: 152 VSVFYTAVIPMFSPFIC 168


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +3

Query: 36  CDYGDKCYRKNPAHFREYSH 95
           C Y  K       H R+YSH
Sbjct: 50  CTYATKYCHSLKLHLRKYSH 69


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 365 IMSCFLCIYLFYL 327
           ++  FLC+ +FYL
Sbjct: 245 VLISFLCVLVFYL 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,654
Number of Sequences: 438
Number of extensions: 2605
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)