Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I21
(459 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g01110.1 68417.m00149 hypothetical protein 31 0.37
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 31 0.49
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 31 0.49
At4g27500.1 68417.m03950 expressed protein non-consensus GA dono... 29 1.5
At2g46950.1 68415.m05864 cytochrome P450 family protein similar ... 28 2.6
At1g11300.1 68414.m01298 S-locus lectin protein kinase family pr... 28 2.6
At3g28770.1 68416.m03591 expressed protein 27 4.6
At4g33500.1 68417.m04758 protein phosphatase 2C-related / PP2C-r... 27 6.1
At4g00560.3 68417.m00079 methionine adenosyltransferase regulato... 27 6.1
At4g00560.2 68417.m00078 methionine adenosyltransferase regulato... 27 6.1
At4g00560.1 68417.m00077 methionine adenosyltransferase regulato... 27 6.1
At3g52710.1 68416.m05807 expressed protein predicted protein, Ar... 27 6.1
At5g10500.1 68418.m01216 kinase interacting family protein simil... 27 8.1
At4g32460.2 68417.m04621 expressed protein contains Pfam profile... 27 8.1
At4g32460.1 68417.m04620 expressed protein contains Pfam profile... 27 8.1
>At4g01110.1 68417.m00149 hypothetical protein
Length = 265
Score = 31.1 bits (67), Expect = 0.37
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -3
Query: 361 CPVFCVFICSTFAVSIRLLVVPLFEFPF*MATVNCFELFASSFKAGSYNF 212
C VFC +C T A+ I LL++ + F F + + SSF+ ++NF
Sbjct: 61 CRVFCCCVCITVAIVILLLILTVSVF-FLYYSPRLPVVRLSSFRVSNFNF 109
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 30.7 bits (66), Expect = 0.49
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 42 YGDKCYRKNPAHFREYSHPHLEAILDLYDGSGAYPIPEKYSLQRV 176
YG R+N ++ + P A + YDGSG+YP P Y ++ V
Sbjct: 167 YGSGSQRENGSYGQA---PPPAAAIPSYDGSGSYPPPTGYGMEAV 208
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 30.7 bits (66), Expect = 0.49
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 42 YGDKCYRKNPAHFREYSHPHLEAILDLYDGSGAYPIPEKYSLQRV 176
YG R+N ++ + P A + YDGSG+YP P Y ++ V
Sbjct: 167 YGSGSQRENGSYGQA---PPPAAAIPSYDGSGSYPPPTGYGMEAV 208
>At4g27500.1 68417.m03950 expressed protein non-consensus GA donor
splice site at exon 6
Length = 612
Score = 29.1 bits (62), Expect = 1.5
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Frame = +3
Query: 3 NEETPKRVKKECDYGDKCYRKNPAHFREYSHPHLEAILDLYD------GSGAYPIPEKYS 164
N + PK +E + + +R Y+ P ++A LDL D + +K
Sbjct: 59 NSDAPKNAAEEWPVAKQIHSFYLVKYRSYADPKIKAKLDLADKELEKLNKARTGVLDKLR 118
Query: 165 LQRVMIAEQLDVI----VEKKLYEPALKEEANSSKQLTVAIQKGNSNSG 299
+R +E D++ E+K + E+ + L A+ K SN G
Sbjct: 119 AKRAERSELFDLLDPLKSERKGFNTMFDEKRKEMEPLQQALGKLRSNDG 167
>At2g46950.1 68415.m05864 cytochrome P450 family protein similar to
cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus];
contains Pfam profile: PF00067: Cytochrome P450
Length = 572
Score = 28.3 bits (60), Expect = 2.6
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -3
Query: 289 EFPF*MATVNCFELFASSFKAGSYNFFSTMT--SSCSAIMTL*RLYFSGIGYAPLPS 125
EF A + F SS+ G F S + C+A +T LYF GI Y P PS
Sbjct: 259 EFKRLTADIIATAAFGSSYAEGIEVFKSQLELQKCCAAALT--DLYFPGIQYLPTPS 313
>At1g11300.1 68414.m01298 S-locus lectin protein kinase family
protein contains protein kinase domain, Pfam:PF00069;
contains S-locus glycoprotein family domain,
Pfam:PF00954
Length = 1635
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -3
Query: 358 PVFCVFICSTFAVSIRLLVVPLFEFPF*MATVNCFELFASSFKAGSYNFFSTMTSS 191
P C+ + S F +S+ L E F +N E SSF+ + FFS + S+
Sbjct: 9 PFVCILVLSCFFLSVSLAQ----ERAFFSGKLNDSETIVSSFRTFRFGFFSPVNST 60
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 27.5 bits (58), Expect = 4.6
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = +3
Query: 186 EQLDVIVEKKLYEPALKEEANSSKQLTVAIQKGNSNSGTTSNLIETAKVEQINTQKTGHN 365
EQ + K + E K + +S + + + + N +G SN++ET +TQ+ G
Sbjct: 170 EQTITRIVKIVVEVKSKSSSEASSEESSSTEHNNVTTG--SNMVETNGENSESTQEKGDG 227
Query: 366 ALSKIATKVSEVNRNENKV 422
VS N NKV
Sbjct: 228 VEGSNGGDVSMENLQGNKV 246
>At4g33500.1 68417.m04758 protein phosphatase 2C-related /
PP2C-related YHR077c (NMD2,IFS1) protein -Saccharomyces
cerevisiae,PID:g555939
Length = 724
Score = 27.1 bits (57), Expect = 6.1
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Frame = +3
Query: 120 LYDGSGAYPIPEKYSLQRVMIAEQLDVIVEKKLYEPALKEEAN----SSKQLTVAIQKGN 287
L DGS + + +++ + AE+ VE + + EEA+ K+L +I + +
Sbjct: 79 LKDGSHVFRFGDASEIEKYLEAEEKARCVEVETQNAKIAEEASEVSRKQKKLVSSIIETS 138
Query: 288 SNSGTTSNLIETAKVEQINTQKTGHNALSKIATKVSEVNRNENKV 422
+ T+ + + V +I +K + K V+ V+R+E+K+
Sbjct: 139 TEKEETAAPSDLSNVIKIKDRKRVRSPTKKKKETVN-VSRSEDKI 182
>At4g00560.3 68417.m00079 methionine adenosyltransferase regulatory
beta subunit-related contains weak similarity to
methionine adenosyltransferase regulatory beta subunit
(GI:6815285) [Homo sapiens]
Length = 253
Score = 27.1 bits (57), Expect = 6.1
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Frame = +3
Query: 39 DYGDKCYRKNPAHFREYSHPHLEAILDLYDGSGAYPIPEKYSLQRVMIAE---QLDVIVE 209
+YG +C + A F +S P +LD + S A+P+ K L I++ Q DV+V
Sbjct: 27 NYGGECELYDVA-FTHHSSPLPARLLDAFPHSPAFPVDLKSGLGLNSISQDFRQPDVVVN 85
Query: 210 -KKLYEP-ALKEEANSSKQLTVAIQKGN--SNSGTTSNLIETAKVEQI 341
L P A +++ +S+ + V N S+ T L+ +Q+
Sbjct: 86 CAALSVPRACEQDPDSAMSINVPTSLVNWLSSFETNKTLLIHLSTDQV 133
>At4g00560.2 68417.m00078 methionine adenosyltransferase regulatory
beta subunit-related contains weak similarity to
methionine adenosyltransferase regulatory beta subunit
(GI:6815285) [Homo sapiens]
Length = 201
Score = 27.1 bits (57), Expect = 6.1
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Frame = +3
Query: 39 DYGDKCYRKNPAHFREYSHPHLEAILDLYDGSGAYPIPEKYSLQRVMIAE---QLDVIVE 209
+YG +C + A F +S P +LD + S A+P+ K L I++ Q DV+V
Sbjct: 27 NYGGECELYDVA-FTHHSSPLPARLLDAFPHSPAFPVDLKSGLGLNSISQDFRQPDVVVN 85
Query: 210 -KKLYEP-ALKEEANSSKQLTVAIQKGN--SNSGTTSNLIETAKVEQI 341
L P A +++ +S+ + V N S+ T L+ +Q+
Sbjct: 86 CAALSVPRACEQDPDSAMSINVPTSLVNWLSSFETNKTLLIHLSTDQV 133
>At4g00560.1 68417.m00077 methionine adenosyltransferase regulatory
beta subunit-related contains weak similarity to
methionine adenosyltransferase regulatory beta subunit
(GI:6815285) [Homo sapiens]
Length = 327
Score = 27.1 bits (57), Expect = 6.1
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Frame = +3
Query: 39 DYGDKCYRKNPAHFREYSHPHLEAILDLYDGSGAYPIPEKYSLQRVMIAE---QLDVIVE 209
+YG +C + A F +S P +LD + S A+P+ K L I++ Q DV+V
Sbjct: 27 NYGGECELYDVA-FTHHSSPLPARLLDAFPHSPAFPVDLKSGLGLNSISQDFRQPDVVVN 85
Query: 210 -KKLYEP-ALKEEANSSKQLTVAIQKGN--SNSGTTSNLIETAKVEQI 341
L P A +++ +S+ + V N S+ T L+ +Q+
Sbjct: 86 CAALSVPRACEQDPDSAMSINVPTSLVNWLSSFETNKTLLIHLSTDQV 133
>At3g52710.1 68416.m05807 expressed protein predicted protein,
Arabidopsis thaliana
Length = 289
Score = 27.1 bits (57), Expect = 6.1
Identities = 24/94 (25%), Positives = 40/94 (42%)
Frame = +3
Query: 96 PHLEAILDLYDGSGAYPIPEKYSLQRVMIAEQLDVIVEKKLYEPALKEEANSSKQLTVAI 275
PH I + + +P PE YSL + QL+ + + +E ++ NSS ++
Sbjct: 30 PHNSKIRPVSISAVDFP-PESYSLSK---EAQLEWLNDNAFFERKESQKGNSSAPISNPN 85
Query: 276 QKGNSNSGTTSNLIETAKVEQINTQKTGHNALSK 377
NS+S S + + + QKT N K
Sbjct: 86 TNPNSSSHRISLKSKASIIRLPKPQKTCFNEAKK 119
>At5g10500.1 68418.m01216 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 848
Score = 26.6 bits (56), Expect = 8.1
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +3
Query: 231 LKEEANSSKQLTVAIQKGNSNSGTTSNLIETAKVEQINTQKTGHNALSKIATKVSEVNRN 410
L+EE + K A+QK N++S T N+ K++++ + N + I +V E + N
Sbjct: 363 LREEIDDLKAQIRALQKENNSSQTDDNMDMGKKLKEMEEKV---NGVKDIDQEVEEKSDN 419
Query: 411 ENK 419
+K
Sbjct: 420 IDK 422
>At4g32460.2 68417.m04621 expressed protein contains Pfam profile
PF04862: Protein of unknown function, DUF642
Length = 365
Score = 26.6 bits (56), Expect = 8.1
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = +3
Query: 198 VIVEKKLYEPALKEEANSSKQLTVAIQKGNSNSGTTSNLIETAKVEQINTQKTGHNALSK 377
++V K + L EA S KQ ++++KG+ S T S A+ E++N H+A+
Sbjct: 75 LVVPKGAFAVRLGNEA-SIKQ-KISVKKGSYYSITFSAARTCAQDERLNVSVAPHHAVMP 132
Query: 378 IATKVS 395
I T S
Sbjct: 133 IQTVYS 138
>At4g32460.1 68417.m04620 expressed protein contains Pfam profile
PF04862: Protein of unknown function, DUF642
Length = 365
Score = 26.6 bits (56), Expect = 8.1
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = +3
Query: 198 VIVEKKLYEPALKEEANSSKQLTVAIQKGNSNSGTTSNLIETAKVEQINTQKTGHNALSK 377
++V K + L EA S KQ ++++KG+ S T S A+ E++N H+A+
Sbjct: 75 LVVPKGAFAVRLGNEA-SIKQ-KISVKKGSYYSITFSAARTCAQDERLNVSVAPHHAVMP 132
Query: 378 IATKVS 395
I T S
Sbjct: 133 IQTVYS 138
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,164,195
Number of Sequences: 28952
Number of extensions: 178469
Number of successful extensions: 499
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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