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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I20
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962...    81   6e-16
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731...    79   2e-15
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689...    77   6e-15
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938...    61   6e-10
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557...    38   0.003
12_02_0123 - 13930138-13932471                                         30   0.90 
06_03_0465 + 21049412-21049878,21049947-21050790,21050994-210511...    28   3.6  
04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317...    27   6.3  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    27   6.3  

>05_05_0279 -
           23794964-23795111,23795486-23795634,23796120-23796221,
           23796309-23796384,23796578-23796588
          Length = 161

 Score = 80.6 bits (190), Expect = 6e-16
 Identities = 42/101 (41%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
 Frame = +1

Query: 28  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 207
           +K  LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ K
Sbjct: 3   LKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHK 62

Query: 208 KG-QEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 327
           K    E                IVGASL  I  KR  KPEV
Sbjct: 63  KDIHAEAVKKRRRTTKKPYSRSIVGASLEVIQKKRAEKPEV 103


>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
            34673237-34675178,34675588-34675658,34676158-34676307,
            34676963-34677038,34677131-34677232,34677707-34677855,
            34678214-34678364
          Length = 1172

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
 Frame = +1

Query: 40   LCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-Q 216
            LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ KK   
Sbjct: 1017 LCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIH 1076

Query: 217  EEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 327
             E                IVGA+L  I  KR+ KPEV
Sbjct: 1077 AEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEV 1113


>07_01_0849 +
           6896930-6896996,6897453-6897474,6897615-6897690,
           6897775-6897876,6898156-6898304,6898637-6898784
          Length = 187

 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
 Frame = +1

Query: 22  VKMKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRK 201
           +K+   LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++
Sbjct: 27  LKVWTELCRFSGAKIYPGKGIRFIRADSQVFLFSNSKCKRYFHNRLKPAKLTWTAMYRKQ 86

Query: 202 FKKG-QEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 327
            KK    E                IVGA+L  I  KR  KPEV
Sbjct: 87  HKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEV 129


>07_01_1199 +
           11391638-11391718,11393477-11393590,11393690-11393826,
           11393905-11394064
          Length = 163

 Score = 60.9 bits (141), Expect = 6e-10
 Identities = 26/56 (46%), Positives = 32/56 (57%)
 Frame = +1

Query: 28  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYR 195
           M++  C +    +YPGHG   V+ D K F F  SKC     M+RNPRKV WT  YR
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR 56


>01_05_0105 -
           18155135-18155297,18155379-18155515,18155621-18155734,
           18155768-18155806,18156838-18156993
          Length = 202

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +1

Query: 112 FTFLNSKCEAAHLMRRNPRKVTWTVLYR 195
           F F  SKC     M+RNPRKV WT  YR
Sbjct: 67  FRFCRSKCHKNFKMKRNPRKVKWTKAYR 94


>12_02_0123 - 13930138-13932471
          Length = 777

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +1

Query: 10  SFRGVKMKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVL 189
           +F GV+M+   C   G+K+    G+T V   G +  ++++K       RR P    WTV+
Sbjct: 130 TFGGVRMEDSGCVAGGFKV----GRTTV---GHSLVYVSTKAPVK--ARRTP----WTVV 176

Query: 190 YRRKFKKGQEE 222
           YR     G+ E
Sbjct: 177 YRTDLADGKTE 187


>06_03_0465 +
           21049412-21049878,21049947-21050790,21050994-21051121,
           21051232-21051247
          Length = 484

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 353 IACSLCAFLTSGFMLRLAMMSLSEAPTIARWNFCVLLVRF 234
           ++C L A + SGF +    M  S A  +A WN   + V++
Sbjct: 181 LSCKLLAPVLSGFFISFVSMEAS-AAALAAWNLAAVWVQY 219


>04_04_0962 +
           29728983-29729034,29729622-29731369,29731656-29731742,
           29732035-29732199,29732437-29732526,29732863-29733027,
           29733124-29733418,29733550-29733764,29733879-29733947,
           29734107-29734184,29734466-29734529,29734658-29734897,
           29734985-29735124
          Length = 1135

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 262 GTFVSFLYVSWPVLLLGPF*IYVCI 188
           GT +   YVSWPVL++    I +CI
Sbjct: 742 GTILIISYVSWPVLIIFIPSILICI 766


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 371 CSFAALIACSLCAFLTSGFMLRL 303
           CSF+ L  C+ CAFL S   L+L
Sbjct: 108 CSFSYLTYCANCAFLVSTVSLQL 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,255,262
Number of Sequences: 37544
Number of extensions: 224775
Number of successful extensions: 548
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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