Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I20
(497 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40) 134 4e-32
SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07) 94 5e-20
SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 91 4e-19
SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 91 4e-19
SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 91 4e-19
SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 91 4e-19
SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07) 89 2e-18
SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07) 88 3e-18
SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.008
SB_6138| Best HMM Match : 7tm_1 (HMM E-Value=2e-19) 29 1.6
SB_34063| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_24509| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
Length = 154
Score = 134 bits (324), Expect = 4e-32
Identities = 62/100 (62%), Positives = 70/100 (70%)
Frame = +1
Query: 28 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 207
MK+ LC YSGYKIYPGHGK V+ DGK F FLN +CE A LMRRNPR+VTWTVLYRRK K
Sbjct: 1 MKLELCNYSGYKIYPGHGKRYVRQDGKVFNFLNKRCERALLMRRNPREVTWTVLYRRKHK 60
Query: 208 KGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 327
KG +EE + GASL +I+AKRN KPEV
Sbjct: 61 KGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 100
>SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)
Length = 139
Score = 94.3 bits (224), Expect = 5e-20
Identities = 44/78 (56%), Positives = 51/78 (65%)
Frame = +1
Query: 94 KVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXI 273
K GK F +LN +CE A LMRRNPR+VTWTVLYRRK KKG +EE +
Sbjct: 38 KFQGKVFNYLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSV 97
Query: 274 VGASLSDIMAKRNMKPEV 327
GASL +I+AKRN KPEV
Sbjct: 98 QGASLDNILAKRNQKPEV 115
>SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 113
Score = 91.5 bits (217), Expect = 4e-19
Identities = 43/74 (58%), Positives = 49/74 (66%)
Frame = +1
Query: 106 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGAS 285
K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE + GAS
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66
Query: 286 LSDIMAKRNMKPEV 327
L +I+AKRN KPEV
Sbjct: 67 LDNILAKRNQKPEV 80
>SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 91.5 bits (217), Expect = 4e-19
Identities = 43/74 (58%), Positives = 49/74 (66%)
Frame = +1
Query: 106 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGAS 285
K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE + GAS
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66
Query: 286 LSDIMAKRNMKPEV 327
L +I+AKRN KPEV
Sbjct: 67 LDNILAKRNQKPEV 80
>SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 91.5 bits (217), Expect = 4e-19
Identities = 43/74 (58%), Positives = 49/74 (66%)
Frame = +1
Query: 106 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGAS 285
K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE + GAS
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66
Query: 286 LSDIMAKRNMKPEV 327
L +I+AKRN KPEV
Sbjct: 67 LDNILAKRNQKPEV 80
>SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 91.5 bits (217), Expect = 4e-19
Identities = 43/74 (58%), Positives = 49/74 (66%)
Frame = +1
Query: 106 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGAS 285
K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE + GAS
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66
Query: 286 LSDIMAKRNMKPEV 327
L +I+AKRN KPEV
Sbjct: 67 LDNILAKRNQKPEV 80
>SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)
Length = 104
Score = 89.0 bits (211), Expect = 2e-18
Identities = 42/74 (56%), Positives = 48/74 (64%)
Frame = +1
Query: 106 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGAS 285
K F FLN +CE A LMRRNPR+VTWTVLYRR KKG +EE + GAS
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRMHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66
Query: 286 LSDIMAKRNMKPEV 327
L +I+AKRN KPEV
Sbjct: 67 LDNILAKRNQKPEV 80
>SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)
Length = 90
Score = 88.2 bits (209), Expect = 3e-18
Identities = 42/74 (56%), Positives = 48/74 (64%)
Frame = +1
Query: 106 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGAS 285
K F FLN +CE A LMRRNPR+VTWTVLYR K KKG +EE + GAS
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRCKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66
Query: 286 LSDIMAKRNMKPEV 327
L +I+AKRN KPEV
Sbjct: 67 LDNILAKRNQKPEV 80
>SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 37.1 bits (82), Expect = 0.008
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 205 KKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 327
KKG +EE + GASL +I+AKRN KPEV
Sbjct: 2 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 42
>SB_6138| Best HMM Match : 7tm_1 (HMM E-Value=2e-19)
Length = 494
Score = 29.5 bits (63), Expect = 1.6
Identities = 29/101 (28%), Positives = 47/101 (46%)
Frame = -1
Query: 383 VDFFCSFAALIACSLCAFLTSGFMLRLAMMSLSEAPTIARWNFCVLLVRFLACSSSWPFL 204
+D FC A+++ ++ AF F ++ M T R + ++ FLA S P
Sbjct: 168 LDVFCHSLAMLSLTVIAF-DRFFGVQYPMR---RTITRTRAKVIIAVIWFLALIDSSP-- 221
Query: 203 NLRLYRTVHVTLRGFLLIKWAASHLEFKNVNVLPSTLTMVF 81
NL +Y V V + L+ WA H + +NV ST ++F
Sbjct: 222 NLYIYSAVDVRGKIGCLMNWAPMHPGSQIINV--STQMVLF 260
>SB_34063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 380 DFFCSFAALIACSLCAFLTSGFMLRLAMMSLSEAPTIARWNFCVLLVRFLACSS 219
DF S AAL+ + + TS ++ L M E PT+ ++ L + CSS
Sbjct: 440 DFVTSLAALVKQNTDLYKTSDRIIGLLSMVAEELPTVPLFHTIDHLSNVIHCSS 493
>SB_24509| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -1
Query: 227 CSSSWPFLNLRLYRTVHVTLRGFLLIKWAASHLEFKNVNVLPSTLTMVFPWPG 69
C +P L L+ +V+ L WA H + +++ S L + F W G
Sbjct: 81 CKVLYPLQTLTLFASVYTLTAVGLTRYWAIVHPMKRQLSITQSKLVIAFIWLG 133
>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 151 MRRNPRKVTWTVLYRR 198
M+RNPRK+ WT +R+
Sbjct: 1 MKRNPRKMKWTKAFRK 16
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,088,380
Number of Sequences: 59808
Number of extensions: 259049
Number of successful extensions: 536
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -