Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I20
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    95   3e-20
Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical pr...    49   2e-06
AF039051-10|AAB94259.3|  313|Caenorhabditis elegans Serpentine r...    29   2.5  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z82263-6|CAJ76936.1|  383|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z82263-3|CAB62793.2|  451|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z82263-2|CAE46670.1|  445|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    27   7.6  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    27   7.6  
AF022985-8|AAB69966.1|  354|Caenorhabditis elegans Hypothetical ...    27   10.0 

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 94.7 bits (225), Expect = 3e-20
 Identities = 55/159 (34%), Positives = 68/159 (42%), Gaps = 4/159 (2%)
 Frame = +1

Query: 28  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 207
           MK+  C YSGYKI+PGHGK +V+ DGK   FL+ K      +RRNPR + WTVLYR K K
Sbjct: 1   MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNK 60

Query: 208 K---GQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEVXXXXXXXXXXXXXXXXX 378
           K   GQE+                + G SL  I+AKRN   +                  
Sbjct: 61  KGTHGQEQVTRKKTKKSVQVVNRAVAGLSLDAILAKRNQTEDFRRQQREQAAKIAKDANK 120

Query: 379 XXXXXXXXXXXXXXXXXXXXXXXXXVSQK-SAPRVGGKR 492
                                     + K +APRVGGKR
Sbjct: 121 AVRAAKAAANKEKKASQPKTQQKTAKNVKTAAPRVGGKR 159


>Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical
           protein C03D6.8 protein.
          Length = 162

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = +1

Query: 28  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR 198
           M+I  C +    IYPGHG   V+ D   F F  S+C      ++NPRK+ +T   RR
Sbjct: 1   MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARR 57


>AF039051-10|AAB94259.3|  313|Caenorhabditis elegans Serpentine
           receptor, class i protein73 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 251 VLLVRFLACSSSWPFLNLRL-YRTVHVTLRGFLLIKWAASHLEFKNVNVL 105
           V  V  + C +   FL L L +   HV + G +LI W ASH     +++L
Sbjct: 245 VQFVTAMLCLAPPIFLTLVLIFEVPHVNVIGEILIAWFASHSSINMISLL 294


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
           protein K04H4.1b protein.
          Length = 1502

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +1

Query: 4   RGSFRGVKMKIGLCAYSGYKIYPGHGKTMVKVDG 105
           R  F G+   IG   YSG K +PG G   V  DG
Sbjct: 471 RDGFPGIPGDIGDPGYSGEKGFPGTGVNKVGPDG 504


>Z82263-6|CAJ76936.1|  383|Caenorhabditis elegans Hypothetical
           protein C47A4.2c protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -1

Query: 368 SFAALIACSLCAFLTSGFMLRLAMMSLSEAPTIARWNFCVLLVRFLACSSSWPF 207
           S A +I  ++C   TS   +   +   ++A T+A   F + L+    C  SW F
Sbjct: 125 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWF 178


>Z82263-3|CAB62793.2|  451|Caenorhabditis elegans Hypothetical
           protein C47A4.2b protein.
          Length = 451

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -1

Query: 368 SFAALIACSLCAFLTSGFMLRLAMMSLSEAPTIARWNFCVLLVRFLACSSSWPF 207
           S A +I  ++C   TS   +   +   ++A T+A   F + L+    C  SW F
Sbjct: 193 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWF 246


>Z82263-2|CAE46670.1|  445|Caenorhabditis elegans Hypothetical
           protein C47A4.2a protein.
          Length = 445

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -1

Query: 368 SFAALIACSLCAFLTSGFMLRLAMMSLSEAPTIARWNFCVLLVRFLACSSSWPF 207
           S A +I  ++C   TS   +   +   ++A T+A   F + L+    C  SW F
Sbjct: 187 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWF 240


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
           protein K04H4.1a protein.
          Length = 1759

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 4   RGSFRGVKMKIGLCAYSGYKIYPGHGKTMVKVDGKT 111
           R  F G+   IG   YSG K +PG G   V   G T
Sbjct: 471 RDGFPGIPGDIGDPGYSGEKGFPGTGVNKVGPPGMT 506


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
           collagen protein.
          Length = 1758

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 4   RGSFRGVKMKIGLCAYSGYKIYPGHGKTMVKVDGKT 111
           R  F G+   IG   YSG K +PG G   V   G T
Sbjct: 470 RDGFPGIPGDIGDPGYSGEKGFPGTGVNKVGPPGMT 505


>AF022985-8|AAB69966.1|  354|Caenorhabditis elegans Hypothetical
           protein T15B7.13 protein.
          Length = 354

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 383 VDFFCSFAALIACSLCAFLTSGFMLRLAMMSL 288
           +DFFC+ + ++  S     TSG  L + M++L
Sbjct: 81  LDFFCNISFIVVLSQKELRTSGINLTMIMIAL 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,332,399
Number of Sequences: 27780
Number of extensions: 194782
Number of successful extensions: 445
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)