Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I20
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ...    79   1e-15
At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)            79   2e-15
At2g44860.1 68415.m05585 60S ribosomal protein L24, putative           60   8e-10
At2g15900.1 68415.m01822 phox (PX) domain-containing protein wea...    28   4.0  
At1g74770.1 68414.m08663 expressed protein                             28   4.0  
At1g30370.1 68414.m03713 lipase class 3 family protein similar t...    27   7.0  
At5g12300.1 68418.m01446 C2 domain-containing protein contains P...    27   9.3  

>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
           ribosomal protein L24, Arabidopsis thaliana,
           EMBL:AC006282
          Length = 163

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
 Frame = +1

Query: 28  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 207
           +K  LC +SG KIYPG G   ++ D + F FLNSKC+     +  P K+ WT +YR++ K
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62

Query: 208 KGQEEEXXXXXXXXXXX-XXXXIVGASLSDIMAKRNMKPEV 327
           K   +E                IVGA+L  I  KR  KPEV
Sbjct: 63  KDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEV 103


>At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)
          Length = 164

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
 Frame = +1

Query: 28  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 207
           +K  LC +SG KIYPG G   ++ D + F FLNSKC+     +  P K+ WT +YR++ K
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHK 62

Query: 208 KGQEEEXXXXXXXXXXX-XXXXIVGASLSDIMAKRNMKPEV 327
           K   +E                IVGA+L  I  KR  KPEV
Sbjct: 63  KDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEV 103


>At2g44860.1 68415.m05585 60S ribosomal protein L24, putative
          Length = 159

 Score = 60.1 bits (139), Expect = 8e-10
 Identities = 27/66 (40%), Positives = 35/66 (53%)
 Frame = +1

Query: 28  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 207
           M++  C +    IYPGHG   V+ D K F F  SKC     M+RNPRKV WT  +R    
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 208 KGQEEE 225
           K   ++
Sbjct: 61  KDMTKD 66


>At2g15900.1 68415.m01822 phox (PX) domain-containing protein weak
           similarity to SP|Q9Y5W8 Sorting nexin 13 {Homo sapiens};
           contains Pfam profiles PF00787: PX domain, PF02194: PXA
           domain
          Length = 1009

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 6   RFVSWSQNEDRSLR-LQWLQDLSWP 77
           R + W +NED   + ++W QD+ WP
Sbjct: 857 REICWLRNEDTIAQGIRWAQDILWP 881


>At1g74770.1 68414.m08663 expressed protein
          Length = 985

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 23/87 (26%), Positives = 36/87 (41%)
 Frame = +3

Query: 153 EEKSP*SNMDRSIQT*IQKGPRRRTGQETYKKDTKVPACNCRSFTQ*HHG*T*HEXXXXX 332
           E+ SP  +  R +   ++ G   +T  E + K   V     R   Q  H     E     
Sbjct: 480 EDSSPKKSFPRLLLQWLRFGYSGKTSVERFWKQLDV-MFKVRCSCQKEHT----EEASGS 534

Query: 333 XXXRTGYQSCKRTEEIYQGFKESSSTC 413
              +T  Q CK ++++Y   K+ SSTC
Sbjct: 535 FSNQTQLQLCKVSKDVYPRKKDKSSTC 561


>At1g30370.1 68414.m03713 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile: PF01764: Lipase
          Length = 529

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 76  HGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR-KFKKGQEEE 225
           HGKT+VKV     +  NSK E     + +  + T   + R   F K + EE
Sbjct: 269 HGKTVVKVQSGFLSIYNSKSELTRYNKESASEQTMDEVKRLVNFFKDRGEE 319


>At5g12300.1 68418.m01446 C2 domain-containing protein contains Pfam
           profile PF00168: C2 domain
          Length = 374

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +1

Query: 7   GSFRGVKMKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTV 186
           GS  G +  I +      ++Y G+G  M      T T L+ +   A    +  R++T   
Sbjct: 219 GSTHGPETDITMVCLEEKELY-GNGSFMAS--SSTTTSLSDEKNTADSNEKENREIT--E 273

Query: 187 LYRRKFKKGQEEE 225
           + RR+ K+G+EEE
Sbjct: 274 VSRRRSKEGEEEE 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,954,347
Number of Sequences: 28952
Number of extensions: 188043
Number of successful extensions: 486
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)