Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I19
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   154   6e-39
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   153   1e-38
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    27   2.0  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   3.5  
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce...    25   6.2  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   8.2  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   8.2  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   8.2  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  154 bits (374), Expect = 6e-39
 Identities = 71/135 (52%), Positives = 94/135 (69%)
 Frame = +2

Query: 20  MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 199
           M  V+VKDV+  K +   AA LK+ GK+  P  +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 200 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGG 379
            RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +Q+LE + ++EK  +GG
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGG 120

Query: 380 RILTTQGRRDLDRIA 424
           R ++ QG+RDLDRIA
Sbjct: 121 RRISQQGQRDLDRIA 135


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  153 bits (371), Expect = 1e-38
 Identities = 70/135 (51%), Positives = 94/135 (69%)
 Frame = +2

Query: 20  MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 199
           M  V+VKDV+  + +   AA LK+ GK+  P  +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 200 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGG 379
            RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +Q+LE + ++EK  +GG
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGG 120

Query: 380 RILTTQGRRDLDRIA 424
           R ++ QG+RDLDRIA
Sbjct: 121 RRISQQGQRDLDRIA 135


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 5   EAQGKMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDH 118
           +++   +S T+K         T A+  KKI  + +PDH
Sbjct: 115 DSENDFQSFTIKSSTTYHTTPTTASENKKIESITIPDH 152


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 242 QS*LQQESGYRCDAV*QHSVHKTNQGHR 159
           QS  +++SGY  D V   S H+T + HR
Sbjct: 90  QSFQREDSGYNDDVVTNSSSHRTPRHHR 117


>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +2

Query: 14  GKMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTA 139
           G+ + V   D+E +K+++    HL  +  +K+   +D++ TA
Sbjct: 224 GEDKMVKCWDLETNKVIRHYHGHLSGVYALKLHPTLDVLVTA 265


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 107 PSLCRSFSSERLQF*RFCLVQHPSL 33
           PSL  SFS E   F   CL ++PSL
Sbjct: 542 PSLPDSFSPEARDFVNKCLNKNPSL 566


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = +2

Query: 80  HLKKIGKVKVPDHMDLVKTAR--FKELAPYDPDWFYVRCAAILRHIYI 217
           H K   K   P H D  KT+R   KE  P  P   Y R  +  R  YI
Sbjct: 627 HAKSFSKYYSPSHKDSNKTSRNTSKEGLPSSPTMLY-RTTSNTRGDYI 673


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 7   GTRQDAFRYSEGC*TRQNRQNCSRSLEKDRQSEGSRSY 120
           G+R  A  + E   +R +     RSLE D Q   SR+Y
Sbjct: 40  GSRASADEFCEQYRSRSHGPQGRRSLEHDNQFFNSRTY 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,656
Number of Sequences: 5004
Number of extensions: 37190
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)