Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I19
(493 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein pro... 182 5e-46
BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19 p... 182 5e-46
BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19 p... 182 5e-46
BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19 p... 182 5e-46
AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19 p... 182 5e-46
BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19 p... 181 1e-45
AB209470-1|BAD92707.1| 249|Homo sapiens proteasome beta 2 subun... 31 2.2
CR456387-1|CAG30273.1| 1171|Homo sapiens bA494O16.1 protein. 30 3.8
BC117670-1|AAI17671.1| 1171|Homo sapiens zinc finger, BED-type c... 30 3.8
AL117328-2|CAB62924.1| 1171|Homo sapiens protein ( Human DNA seq... 30 3.8
AB014537-1|BAA31612.2| 1175|Homo sapiens KIAA0637 protein protein. 30 3.8
BC150265-1|AAI50266.1| 1481|Homo sapiens CRKRS protein protein. 29 6.6
AF227198-1|AAF36401.1| 1490|Homo sapiens CrkRS protein. 29 6.6
AB020711-1|BAA74927.2| 1535|Homo sapiens KIAA0904 protein protein. 29 6.6
AB007155-1|BAA28593.1| 18|Homo sapiens ribosomal protein S19 p... 29 8.8
>M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein
protein.
Length = 145
Score = 182 bits (444), Expect = 5e-46
Identities = 86/135 (63%), Positives = 105/135 (77%)
Frame = +2
Query: 20 MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 199
M VTVKDV Q + V+ +AA LKK GK+KVP+ +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 200 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGG 379
RH+Y+R GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQALE LK+VEK QDGG
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG 120
Query: 380 RILTTQGRRDLDRIA 424
R LT QG+RDLDRIA
Sbjct: 121 RKLTPQGQRDLDRIA 135
>BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 182 bits (444), Expect = 5e-46
Identities = 86/135 (63%), Positives = 105/135 (77%)
Frame = +2
Query: 20 MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 199
M VTVKDV Q + V+ +AA LKK GK+KVP+ +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 200 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGG 379
RH+Y+R GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQALE LK+VEK QDGG
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG 120
Query: 380 RILTTQGRRDLDRIA 424
R LT QG+RDLDRIA
Sbjct: 121 RKLTPQGQRDLDRIA 135
>BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 182 bits (444), Expect = 5e-46
Identities = 86/135 (63%), Positives = 105/135 (77%)
Frame = +2
Query: 20 MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 199
M VTVKDV Q + V+ +AA LKK GK+KVP+ +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 200 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGG 379
RH+Y+R GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQALE LK+VEK QDGG
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG 120
Query: 380 RILTTQGRRDLDRIA 424
R LT QG+RDLDRIA
Sbjct: 121 RKLTPQGQRDLDRIA 135
>BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 182 bits (444), Expect = 5e-46
Identities = 86/135 (63%), Positives = 105/135 (77%)
Frame = +2
Query: 20 MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 199
M VTVKDV Q + V+ +AA LKK GK+KVP+ +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 200 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGG 379
RH+Y+R GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQALE LK+VEK QDGG
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG 120
Query: 380 RILTTQGRRDLDRIA 424
R LT QG+RDLDRIA
Sbjct: 121 RKLTPQGQRDLDRIA 135
>AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 182 bits (444), Expect = 5e-46
Identities = 86/135 (63%), Positives = 105/135 (77%)
Frame = +2
Query: 20 MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 199
M VTVKDV Q + V+ +AA LKK GK+KVP+ +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 200 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGG 379
RH+Y+R GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQALE LK+VEK QDGG
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG 120
Query: 380 RILTTQGRRDLDRIA 424
R LT QG+RDLDRIA
Sbjct: 121 RKLTPQGQRDLDRIA 135
>BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19
protein.
Length = 157
Score = 181 bits (441), Expect = 1e-45
Identities = 85/132 (64%), Positives = 104/132 (78%)
Frame = +2
Query: 29 VTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRH 208
VTVKDV Q + V+ +AA LKK GK+KVP+ +D VK A+ KELAPYD +WFY R A+ RH
Sbjct: 16 VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARH 75
Query: 209 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGGRIL 388
+Y+R GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQALE LK+VEK QDGGR L
Sbjct: 76 LYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKL 135
Query: 389 TTQGRRDLDRIA 424
T QG+RDLDRIA
Sbjct: 136 TPQGQRDLDRIA 147
>AB209470-1|BAD92707.1| 249|Homo sapiens proteasome beta 2 subunit
variant protein.
Length = 249
Score = 31.1 bits (67), Expect = 2.2
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +2
Query: 161 YDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKAL 331
Y P R +LR P G + T + GGR+ G S CR G R+AL
Sbjct: 179 YTPTISRERAVELLRKCLEEGPGGAGSSTALGGGRRSVGQDRSSSCRRKGRGRRRAL 235
>CR456387-1|CAG30273.1| 1171|Homo sapiens bA494O16.1 protein.
Length = 1171
Score = 30.3 bits (65), Expect = 3.8
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 333 WRALRAILPDDLQK*EGVTPLRLRPPKILVTVLTPTGE 220
WRA RAI+ + G+ PL PP +L ++L P GE
Sbjct: 332 WRAHRAIVLQE-NGGTGIPPLYSTPPTLLPSLLPPEGE 368
>BC117670-1|AAI17671.1| 1171|Homo sapiens zinc finger, BED-type
containing 4 protein.
Length = 1171
Score = 30.3 bits (65), Expect = 3.8
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 333 WRALRAILPDDLQK*EGVTPLRLRPPKILVTVLTPTGE 220
WRA RAI+ + G+ PL PP +L ++L P GE
Sbjct: 332 WRAHRAIVLQE-NGGTGIPPLYSTPPTLLPSLLPPEGE 368
>AL117328-2|CAB62924.1| 1171|Homo sapiens protein ( Human DNA
sequence from clone RP11-494O16 on chromosome 22
Contains the ZBED4 gene for zinc finger, BED-type
containing 4, the gene for ).
Length = 1171
Score = 30.3 bits (65), Expect = 3.8
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 333 WRALRAILPDDLQK*EGVTPLRLRPPKILVTVLTPTGE 220
WRA RAI+ + G+ PL PP +L ++L P GE
Sbjct: 332 WRAHRAIVLQE-NGGTGIPPLYSTPPTLLPSLLPPEGE 368
>AB014537-1|BAA31612.2| 1175|Homo sapiens KIAA0637 protein protein.
Length = 1175
Score = 30.3 bits (65), Expect = 3.8
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 333 WRALRAILPDDLQK*EGVTPLRLRPPKILVTVLTPTGE 220
WRA RAI+ + G+ PL PP +L ++L P GE
Sbjct: 336 WRAHRAIVLQE-NGGTGIPPLYSTPPTLLPSLLPPEGE 372
>BC150265-1|AAI50266.1| 1481|Homo sapiens CRKRS protein protein.
Length = 1481
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1
Query: 76 RSLEKDRQSEGSRSYGLGKDSSFQGTGS 159
++L K+R GS S+ LG+ SS+QGTGS
Sbjct: 1359 QTLVKNRTFSGSLSH-LGESSSYQGTGS 1385
>AF227198-1|AAF36401.1| 1490|Homo sapiens CrkRS protein.
Length = 1490
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1
Query: 76 RSLEKDRQSEGSRSYGLGKDSSFQGTGS 159
++L K+R GS S+ LG+ SS+QGTGS
Sbjct: 1368 QTLVKNRTFSGSLSH-LGESSSYQGTGS 1394
>AB020711-1|BAA74927.2| 1535|Homo sapiens KIAA0904 protein protein.
Length = 1535
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1
Query: 76 RSLEKDRQSEGSRSYGLGKDSSFQGTGS 159
++L K+R GS S+ LG+ SS+QGTGS
Sbjct: 1413 QTLVKNRTFSGSLSH-LGESSSYQGTGS 1439
>AB007155-1|BAA28593.1| 18|Homo sapiens ribosomal protein S19
protein.
Length = 18
Score = 29.1 bits (62), Expect = 8.8
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 377 GRILTTQGRRDLDRIA 424
GR LT QG+RDLDRIA
Sbjct: 1 GRKLTPQGQRDLDRIA 16
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,204,330
Number of Sequences: 237096
Number of extensions: 1460820
Number of successful extensions: 3273
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3273
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -