Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I19
(493 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ... 157 3e-39
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi... 157 4e-39
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ... 155 2e-38
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote... 28 3.0
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063... 28 3.0
At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containi... 28 3.9
At4g23550.1 68417.m03393 WRKY family transcription factor contai... 27 5.2
At1g51990.2 68414.m05865 O-methyltransferase family 2 protein si... 27 5.2
At1g51990.1 68414.m05864 O-methyltransferase family 2 protein si... 27 5.2
At1g43620.2 68414.m05008 UDP-glucose:sterol glucosyltransferase,... 27 9.1
At1g43620.1 68414.m05007 UDP-glucose:sterol glucosyltransferase,... 27 9.1
>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
RIBOSOMAL PROTEIN S19 - Oryza sativa,
SWISSPROT:RS19_ORYSA
Length = 143
Score = 157 bits (382), Expect = 3e-39
Identities = 71/131 (54%), Positives = 93/131 (70%)
Frame = +2
Query: 32 TVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 211
TVKDV VK A+HLK+ GK+++P D+VKT R KELAPYDPDW+Y+R A++ R I
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKI 65
Query: 212 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGGRILT 391
Y+R +GV +I+GG KRNG P HFC+SSG IAR LQ LE + +VE GGR +T
Sbjct: 66 YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRIT 125
Query: 392 TQGRRDLDRIA 424
+ G+RDLD++A
Sbjct: 126 SSGQRDLDQVA 136
>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
Length = 143
Score = 157 bits (381), Expect = 4e-39
Identities = 69/131 (52%), Positives = 93/131 (70%)
Frame = +2
Query: 32 TVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 211
TVKDV VK A+HLK+ GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 212 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGGRILT 391
Y+R +GV +I+GG KRNG P HFC+SSG IAR LQ LE + +VE GGR +T
Sbjct: 66 YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRIT 125
Query: 392 TQGRRDLDRIA 424
+ G+RDLD++A
Sbjct: 126 SSGQRDLDQVA 136
>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
Length = 143
Score = 155 bits (376), Expect = 2e-38
Identities = 67/131 (51%), Positives = 94/131 (71%)
Frame = +2
Query: 32 TVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 211
TVKDV + VK AAHLK+ GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 212 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGGRILT 391
Y+R +GV +I+GG KRNG P HFC+SSG +AR LQ L+ + +V+ GGR +T
Sbjct: 66 YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKIT 125
Query: 392 TQGRRDLDRIA 424
+ G+RDLD++A
Sbjct: 126 SSGQRDLDQVA 136
>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
kinase, putative
Length = 666
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 77 AHLKKIGKVKVPDHMDLVK-TARFKELAPYDPDWFYVRCAAILRHIYIRS 223
+H V P+ D + T F+ ++ ++ WF C+A++ H+ + S
Sbjct: 15 SHSDSSSTVSCPNGTDFHQLTTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64
>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
Domain of unknown function (DUF383) and PF04064: Domain
of unknown function (DUF384)
Length = 339
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 293 FCRSSGSIARKALQALEALKL-VEKVQDGGRILTTQGRRDLDRI 421
FCRSSG A + + ++ + + K +DG ++L RR L +I
Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQI 186
>At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 633
Score = 27.9 bits (59), Expect = 3.9
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 230 GVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVE--KVQDGGRILTTQGR 403
G + ++F G R+G PSHF +S A + LE K V ++ G +++ G
Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 301
Query: 404 RDLDRIA 424
LD A
Sbjct: 302 TLLDMYA 308
>At4g23550.1 68417.m03393 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA binding domain
Length = 304
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 368 EPSLPTSTLQELGELYEQY 312
EP + TS L ELGELY+ +
Sbjct: 43 EPEMETSGLDELGELYKPF 61
>At1g51990.2 68414.m05865 O-methyltransferase family 2 protein
similar to caffeic acid O-methyltransferase GI:5031492
from [Ocimum basilicum], [SP|Q00763] [Populus
tremuloides]
Length = 363
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 70 CSRSLEKDRQSEGSRSYGLGK 132
C+ L KD + SR+YGLGK
Sbjct: 87 CTCKLVKDEEGRESRAYGLGK 107
>At1g51990.1 68414.m05864 O-methyltransferase family 2 protein
similar to caffeic acid O-methyltransferase GI:5031492
from [Ocimum basilicum], [SP|Q00763] [Populus
tremuloides]
Length = 363
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 70 CSRSLEKDRQSEGSRSYGLGK 132
C+ L KD + SR+YGLGK
Sbjct: 87 CTCKLVKDEEGRESRAYGLGK 107
>At1g43620.2 68414.m05008 UDP-glucose:sterol glucosyltransferase,
putative similar to UDP-glucose:sterol
glucosyltransferase [Arabidopsis thaliana] GI:2462931;
contains Pfam profile: PF03033 glycosyltransferase
family 28 N-terminal domain
Length = 615
Score = 26.6 bits (56), Expect = 9.1
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +2
Query: 32 TVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRH 208
T+KD EQ IV L + +VP+++ LV E P+D W + +C+A++ H
Sbjct: 433 TLKDTEQRGIVDRGWGGLGNLA-TEVPENVFLV------EDCPHD--WLFPQCSAVVHH 482
>At1g43620.1 68414.m05007 UDP-glucose:sterol glucosyltransferase,
putative similar to UDP-glucose:sterol
glucosyltransferase [Arabidopsis thaliana] GI:2462931;
contains Pfam profile: PF03033 glycosyltransferase
family 28 N-terminal domain
Length = 615
Score = 26.6 bits (56), Expect = 9.1
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +2
Query: 32 TVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRH 208
T+KD EQ IV L + +VP+++ LV E P+D W + +C+A++ H
Sbjct: 433 TLKDTEQRGIVDRGWGGLGNLA-TEVPENVFLV------EDCPHD--WLFPQCSAVVHH 482
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,361,936
Number of Sequences: 28952
Number of extensions: 204508
Number of successful extensions: 550
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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