Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I18
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   1.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   5.9  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    25   7.8  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   7.8  

>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 278 SKNFLFTCGSPFYNNASSCQTSL 210
           SKNF FT GS   NN+++  +S+
Sbjct: 217 SKNFAFTSGSSSTNNSTTSSSSM 239


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 278 SKNFLFTCGSPFYNNASSCQTSL 210
           S +F  T GSP+YN +S   +S+
Sbjct: 211 SSSFTTTTGSPYYNTSSFLPSSV 233


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 289 KCEIAKI-FYSLVDLHFIIMRLAVKRRYIN*FIGTC 185
           +C++ KI FYS   L F +++  +   Y+N  +  C
Sbjct: 345 QCKVDKISFYSNSSLSFPVLKRMITNEYLNSDVRIC 380


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 111 HTALILHELILNRLILNIGYIKTTL 185
           HT + +H+  L + ++N+G++  TL
Sbjct: 802 HTTVNIHQRYLEKGLMNLGHLHLTL 826


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,634,260
Number of Sequences: 5004
Number of extensions: 29015
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)