Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I18
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68753-2|CAD56618.1|  480|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z68753-1|CAA92989.1|  499|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U97009-2|AAC69029.3|  342|Caenorhabditis elegans Serpentine rece...    27   9.1  

>Z68753-2|CAD56618.1|  480|Caenorhabditis elegans Hypothetical
           protein ZC518.1b protein.
          Length = 480

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 78  YVSYWASLEWSLNV 37
           Y  YW S++WSLN+
Sbjct: 179 YSRYWTSIQWSLNL 192


>Z68753-1|CAA92989.1|  499|Caenorhabditis elegans Hypothetical
           protein ZC518.1a protein.
          Length = 499

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 78  YVSYWASLEWSLNV 37
           Y  YW S++WSLN+
Sbjct: 179 YSRYWTSIQWSLNL 192


>U97009-2|AAC69029.3|  342|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 33 protein.
          Length = 342

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 99  FFGNYFDYVSYWASLEWSLN 40
           FFG +F Y+SY   L  SLN
Sbjct: 102 FFGEWFSYMSYVGILHLSLN 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,691,591
Number of Sequences: 27780
Number of extensions: 153213
Number of successful extensions: 253
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)