Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I17
(466 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 157 1e-39
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 27 1.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.4
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 1.9
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 4.3
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 5.7
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 25 7.5
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 25 7.5
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces... 25 7.5
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo... 25 7.5
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 24 9.9
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 24 9.9
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 24 9.9
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 157 bits (380), Expect = 1e-39
Identities = 78/149 (52%), Positives = 108/149 (72%), Gaps = 2/149 (1%)
Frame = +1
Query: 25 KILKAGAIEPDTFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 198
KI+K + +P + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 199 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 378
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123
Query: 379 YDAILEDLVFPAEIVGKRIRVKLDASQLI 465
++AILED+VFP EI+GKR R D + I
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTI 152
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 27.1 bits (57), Expect = 1.4
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +1
Query: 55 DTFETSISQALVELETNSDLKAQLRELYITKAKEIEL 165
+T+E I + L++L + S++ Q+ ++I E+E+
Sbjct: 78 ETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEV 114
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.1 bits (57), Expect = 1.4
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 31 LKAGA-IEPDTFETSISQALVE--LETNSDLKAQLRELY 138
+KA A I+PD FE +I Q L + N LK ++ +LY
Sbjct: 2123 VKANAFIDPDNFEVNIEQTLSKNFFGNNQYLKLKIMQLY 2161
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 187 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 279
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 4.3
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 28 ILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIEL 165
I + G + +TF+ +SQA ++ + L +RE ++ E +L
Sbjct: 3170 ISRLGVVSKNTFQLPMSQANIQRFAENVLPVSVREAFLRDFVETKL 3215
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 5.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 307 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 432
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 24.6 bits (51), Expect = 7.5
Identities = 27/105 (25%), Positives = 47/105 (44%)
Frame = +1
Query: 10 FKMSTKILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIII 189
FK STK+L A + D+ E VE+E ++K RE Y T + + +
Sbjct: 275 FKTSTKLLSA-KVNGDSVE-------VEIE---NMKNNKRETYQTDVLLVAI-GRVPYTE 322
Query: 190 YVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHK 324
+ + KL R++ + E + + H+ +GD + P +HK
Sbjct: 323 GLGLDKLGISMDKSNRVIMDSEYRTNIPHIRVIGDATLGPMLAHK 367
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 24.6 bits (51), Expect = 7.5
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -1
Query: 391 IWRHIQKSVSWNGAFSVCWLHVSCGWAWAGS 299
+W HI+ W F++ L CG W S
Sbjct: 247 VWSHIENYTDWPDGFAI--LMSFCGVIWTMS 275
>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 24.6 bits (51), Expect = 7.5
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +1
Query: 244 RELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIV 423
++LEK+F G + + PK + K RSR L + A + + VF
Sbjct: 108 KDLEKQFPGYDYTACHEDPVFPKKEKIYKADYKTSIQRSRVLAEFF-AKVPEKVFAVVTH 166
Query: 424 GKRIRV 441
G IR+
Sbjct: 167 GVDIRL 172
>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 325
Score = 24.6 bits (51), Expect = 7.5
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 31 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIE 162
L A+E T E + V + S LKA +++ + K E++
Sbjct: 92 LLKSAVETITLENGLRNRRVNVTKKSTLKASVKKSTLKKKNEVD 135
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 24.2 bits (50), Expect = 9.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 387 GVIYRSQCPGTGPFLFV 337
G+IYRS CP F F+
Sbjct: 68 GIIYRSACPRASNFNFL 84
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 24.2 bits (50), Expect = 9.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 351 PFLFVGYTCLVAGLGQDLTVTNEHNM 274
P ++VGY VAG+G + V +M
Sbjct: 424 PLIYVGYISCVAGMGAMICVNATTSM 449
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 24.2 bits (50), Expect = 9.9
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -3
Query: 266 LNFFSNSRTSLIWIFWNAFS 207
L F+ R S +W WN S
Sbjct: 234 LGIFAKKRFSFLWFLWNTSS 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,644
Number of Sequences: 5004
Number of extensions: 39641
Number of successful extensions: 129
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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