Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I17
(466 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 151 3e-37
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 31 0.47
SB_53959| Best HMM Match : 7tm_1 (HMM E-Value=0.016) 31 0.62
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 30 0.82
SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 29 2.5
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 27 5.8
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3) 27 5.8
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_35937| Best HMM Match : LRR_1 (HMM E-Value=7.1e-09) 27 5.8
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 27 5.8
SB_1011| Best HMM Match : 7tm_2 (HMM E-Value=2e-40) 27 7.7
SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
Length = 157
Score = 151 bits (366), Expect = 3e-37
Identities = 75/117 (64%), Positives = 93/117 (79%)
Frame = +1
Query: 10 FKMSTKILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIII 189
F S KI+K + FE ISQA++ELE NSD+KAQLRELYI+ AKEI++ KK+III
Sbjct: 5 FTASAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIII 64
Query: 190 YVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 360
+VP+P+++AFQKIQ RLVRELEKKFSGKHVV V R+ILP+P+ K+R KQKRPRS
Sbjct: 65 FVPVPQIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 31.1 bits (67), Expect = 0.47
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Frame = +1
Query: 103 NSDLKAQLRELYITKAKEIE---LHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFS-- 267
+ + K L+E+ I ++K+ E + + KS PKLKA Q + + KK
Sbjct: 261 HEEKKEDLKEVVIKQSKQDEATAIKDSKSESKPASKPKLKAVQNDAPKKANKPAKKAKKP 320
Query: 268 ---GKHVVFVGDRKILPKPSHKTRVANKQKRPRS 360
K V+ LP+ +H+ AN Q+RP++
Sbjct: 321 VKRAKKVLNKKKMDTLPRGAHRPASANAQRRPQN 354
>SB_53959| Best HMM Match : 7tm_1 (HMM E-Value=0.016)
Length = 185
Score = 30.7 bits (66), Expect = 0.62
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 355 GAFSVCWLHVSCGWAWAGSYGH 290
GAF VCWL S G +W + GH
Sbjct: 105 GAFVVCWLPYSIGTSWKLATGH 126
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 30.3 bits (65), Expect = 0.82
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +1
Query: 10 FKMSTKILKAGAIEP---DTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKS 180
++ K ++ G + P + ++T ++ L + L+ +RELY +E E KKS
Sbjct: 153 YQFMKKCVQEGPVTPMAQEQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKS 212
Query: 181 IIIYVPM-PKLKAFQ 222
++ ++ + PK+K +
Sbjct: 213 MVQHILVKPKVKGVE 227
>SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 212 RHSKRSKSGLSVS*KRSSAVSMLCS 286
RH RS+S L + K+S AV++LCS
Sbjct: 574 RHRSRSRSRLEIVSKKSPAVNVLCS 598
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 28.7 bits (61), Expect = 2.5
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Frame = +1
Query: 97 ETNSDLKAQLRE----LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKF 264
E N+ LK +L E L +T+ +E E+ N K + +YV M KL++ Q ELEK+
Sbjct: 1699 EDNAILKRKLDEKETALKVTQDREREM-NDKLMALYVNMSKLESTQGTLEEKNAELEKE- 1756
Query: 265 SGKHVVFVGDRKILP-KPSHKTRVANKQ 345
++ ++I P K S T VA +
Sbjct: 1757 -----LYSAQQEIQPLKDSFNTAVAENE 1779
>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
Length = 591
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 55 DTFETSISQALVELETNSDLKAQLRELYITKAKE-IELHNKKSIII 189
+T + + + +LE D KAQL EL + KAKE L KS +
Sbjct: 224 ETLQEQEKETIQQLE--EDFKAQLNELEVEKAKEQTALEEMKSFTV 267
>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
Length = 151
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/26 (42%), Positives = 21/26 (80%)
Frame = +1
Query: 193 VPMPKLKAFQKIQIRLVRELEKKFSG 270
VP+P++ A QK++ +L R++E+K +G
Sbjct: 69 VPLPQVSAMQKVKGKL-RDMEQKLNG 93
>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 27.5 bits (58), Expect = 5.8
Identities = 20/97 (20%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Frame = +1
Query: 58 TFETSISQALVELETNSDLKAQLRELYITKAKEI-----ELHNKKSIIIYVPMPKLKAFQ 222
T + Q E++T+ + K +RE ITK K + E +++++ + K+
Sbjct: 241 TLSDAAKQCSTEIKTSENKKMTIREDMITKRKHVRDRRREHREEETVLRKDELDKVAKLY 300
Query: 223 KIQIRLVRELEKKF---SGKHVVFVGDRKILPKPSHK 324
+ + + +RE+E++F K+ + +R++ + K
Sbjct: 301 EEEKQDLREMEQEFQNMEAKYNAILEERRLAAEAEKK 337
>SB_35937| Best HMM Match : LRR_1 (HMM E-Value=7.1e-09)
Length = 224
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -3
Query: 383 SYTEVSVLERGLFCLLATRVLWLGLGRILRSPTNTTCLPLNFFSNSRTSLIWIFW 219
SY +S + + L A R L L ++ P +T LPL +F S + +FW
Sbjct: 60 SYNRLSFIPADIGKLRALRELNLEGNQLGAMPISTLFLPLKYFRISNNFIHPLFW 114
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 27.5 bits (58), Expect = 5.8
Identities = 20/91 (21%), Positives = 41/91 (45%)
Frame = +1
Query: 31 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 210
LKA T ET S E E ++ RE+ + ++ H+++ + L
Sbjct: 35 LKASQFRKLTRETGASVLRNERERSAKRAQAFREISPSSPQDRRKHSERRPFLATECDNL 94
Query: 211 KAFQKIQIRLVRELEKKFSGKHVVFVGDRKI 303
+ +K + +++RE+ KK + +G+ +I
Sbjct: 95 QEAEKWRHQIIREVAKKVAQIQNAGLGEFRI 125
>SB_1011| Best HMM Match : 7tm_2 (HMM E-Value=2e-40)
Length = 406
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 373 KSVSWNGAFSVCWLHVSCGWAWA 305
K ++GA + CWL V G WA
Sbjct: 260 KGYGYHGAQTACWLSVDNGLIWA 282
>SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 292 DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILED 399
D I+P P H+T N +K L S+ D +D
Sbjct: 434 DELIIPPPRHRTETHNDEKFNVEERLRSLLDVAADD 469
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,845,440
Number of Sequences: 59808
Number of extensions: 306385
Number of successful extensions: 1011
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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