Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I17
(466 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 149 7e-37
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 149 7e-37
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 147 4e-36
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 136 9e-33
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 136 9e-33
At4g28430.1 68417.m04069 reticulon family protein contains Pfam ... 30 0.67
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 30 0.89
At4g15710.1 68417.m02391 hypothetical protein 28 2.7
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 3.6
At5g62620.1 68418.m07859 galactosyltransferase family protein co... 27 6.2
At5g40640.1 68418.m04933 expressed protein 27 6.2
At4g21585.1 68417.m03124 bifunctional nuclease, putative similar... 27 8.3
At1g27920.1 68414.m03421 microtubule associated protein (MAP65/A... 27 8.3
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 149 bits (362), Expect = 7e-37
Identities = 75/149 (50%), Positives = 111/149 (74%), Gaps = 2/149 (1%)
Frame = +1
Query: 25 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 198
KI K + P FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 199 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 378
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 379 YDAILEDLVFPAEIVGKRIRVKLDASQLI 465
++A+LED+ +PAEIVGKR R +LD ++++
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRLDGTKIM 151
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 149 bits (362), Expect = 7e-37
Identities = 75/149 (50%), Positives = 111/149 (74%), Gaps = 2/149 (1%)
Frame = +1
Query: 25 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 198
KI K + P FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 199 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 378
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 379 YDAILEDLVFPAEIVGKRIRVKLDASQLI 465
++A+LED+ +PAEIVGKR R +LD ++++
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRLDGTKIM 151
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 147 bits (356), Expect = 4e-36
Identities = 78/154 (50%), Positives = 108/154 (70%), Gaps = 2/154 (1%)
Frame = +1
Query: 10 FKMSTKILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSI 183
F KI K EP E ++QAL +LE TN +LK++L++LYI +A +++ N+K++
Sbjct: 2 FSAQNKIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAV 61
Query: 184 IIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSR 363
+IYVP KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+R
Sbjct: 62 VIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNR 117
Query: 364 TLTSVYDAILEDLVFPAEIVGKRIRVKLDASQLI 465
TLTSV++A+LED+ FPAEIVGKR R +LD S+++
Sbjct: 118 TLTSVHEAMLEDVAFPAEIVGKRTRYRLDGSKIM 151
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 136 bits (328), Expect = 9e-33
Identities = 70/154 (45%), Positives = 107/154 (69%), Gaps = 2/154 (1%)
Frame = +1
Query: 10 FKMSTKILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSI 183
F KI K +E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I
Sbjct: 2 FSAQHKIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAI 61
Query: 184 IIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSR 363
++ VP KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+R
Sbjct: 62 VVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNR 117
Query: 364 TLTSVYDAILEDLVFPAEIVGKRIRVKLDASQLI 465
TLTSV++AIL+D+V PAEIVGKR R +LD ++++
Sbjct: 118 TLTSVHEAILDDVVLPAEIVGKRTRYRLDGTKIM 151
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 136 bits (328), Expect = 9e-33
Identities = 70/154 (45%), Positives = 107/154 (69%), Gaps = 2/154 (1%)
Frame = +1
Query: 10 FKMSTKILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSI 183
F KI K +E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I
Sbjct: 2 FSAQHKIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAI 61
Query: 184 IIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSR 363
++ VP KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+R
Sbjct: 62 VVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNR 117
Query: 364 TLTSVYDAILEDLVFPAEIVGKRIRVKLDASQLI 465
TLTSV++AIL+D+V PAEIVGKR R +LD ++++
Sbjct: 118 TLTSVHEAILDDVVLPAEIVGKRTRYRLDGTKIM 151
>At4g28430.1 68417.m04069 reticulon family protein contains Pfam
profile PF02453: Reticulon
Length = 457
Score = 30.3 bits (65), Expect = 0.67
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 424 QQSRPGIPDLPIWRHIQKSVSWNGAFSVCWL 332
++ R I DL +WR + KS W G +C+L
Sbjct: 189 ERIRENISDLIMWRDVAKSTLWFGFGCICFL 219
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 29.9 bits (64), Expect = 0.89
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -3
Query: 458 CDASSFTLMRLPTISAGNTRSSNMASYTEVSVLE 357
CD+S+ T +R+P + G S +A ++ + V++
Sbjct: 66 CDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMD 99
>At4g15710.1 68417.m02391 hypothetical protein
Length = 141
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = -2
Query: 177 FFVMKFNFLGLGNVQFPQLSLQVRVSLKFNKSLRDRSLEGVGFYS 43
FF MKF + G G++ + + +L++R +L + ++RD + V +S
Sbjct: 89 FFAMKFEWAGEGDLDYTRSNLELR-TLLIDAAMRDHDDDYVRAWS 132
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 3.6
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +1
Query: 160 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 309
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
>At5g62620.1 68418.m07859 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 681
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 1 ARGFKMSTKILKAGAIEPDTFETSISQALVELETNS 108
A+G + T+IL + +P+TF S VEL ++
Sbjct: 97 AQGLRRRTRILSSLRFDPETFNPSSKDGSVELHKSA 132
>At5g40640.1 68418.m04933 expressed protein
Length = 586
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +1
Query: 217 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 384
F++ + LV++L KH F G + +P+P QK + +T ++ D
Sbjct: 517 FRRHFVELVKKLSNDLDNKHNRFEGGSRSVPRPGKTVSRIFSQKSFKKKTSSNGSD 572
>At4g21585.1 68417.m03124 bifunctional nuclease, putative similar to
bifunctional nuclease [Zinnia elegans]
gi|4099833|gb|AAD00694
Length = 299
Score = 26.6 bits (56), Expect = 8.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 414 RDCWQTHQSEARCVT 458
RDC TH+++ RCVT
Sbjct: 99 RDCHDTHKNQDRCVT 113
>At1g27920.1 68414.m03421 microtubule associated protein
(MAP65/ASE1) family protein low similarity to protein
regulating cytokinesis 1 (PRC1) [Homo sapiens]
GI:2865521; contains Pfam profile PF03999: Microtubule
associated protein (MAP65/ASE1 family)
Length = 592
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 73 ISQALVELETNSDLKA-QLRELYITKAKEIE 162
I QA E++ LKA +++EL+I K KE+E
Sbjct: 333 IQQAEAEVKRLDQLKASRIKELFIKKQKELE 363
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,324,368
Number of Sequences: 28952
Number of extensions: 215002
Number of successful extensions: 631
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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