Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I16
(490 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 166 7e-42
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 163 9e-41
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 131 1e-35
01_06_0355 + 28657833-28660665,28660762-28661126 30 1.1
06_03_1139 + 27925970-27925985,27926427-27927079 29 2.6
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 6.1
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687... 27 8.1
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 166 bits (404), Expect = 7e-42
Identities = 77/115 (66%), Positives = 95/115 (82%), Gaps = 1/115 (0%)
Frame = +2
Query: 74 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 250
T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Query: 251 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 415
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 163 bits (395), Expect = 9e-41
Identities = 76/115 (66%), Positives = 94/115 (81%), Gaps = 1/115 (0%)
Frame = +2
Query: 74 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 250
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 251 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 415
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 131 bits (316), Expect(2) = 1e-35
Identities = 60/89 (67%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
Frame = +2
Query: 74 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 250
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 251 GGGKSTGFALIYDTLDLAKKFEPKHRLAR 337
GGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 35.9 bits (79), Expect(2) = 1e-35
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +2
Query: 338 HGLYEKKRPTRKQRKERKNRMKKVRG 415
+GL K +RKQ KERKNR KK+RG
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRG 153
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 234 PNTKTTSGVTLYILASFSRISVLLTVGFPGCKTSHTICLRANNLLVINL 88
PN S +TL L + + L +GFP CK H + + + LL + L
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLLKVVL 718
>06_03_1139 + 27925970-27925985,27926427-27927079
Length = 222
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -1
Query: 463 TVTSLLGGRTYFRFLGTSYLLHSVLTFLTLFACRPLLFIQAVTSESVFW 317
TV L GRT+ R + + + ++L +L+L+ L + S+S+ W
Sbjct: 16 TVREALQGRTWIRDISGALGIQAILEYLSLWTSLQSLDALSEESDSIIW 64
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.5 bits (58), Expect = 6.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 341 GLYEKKRPTRKQRKERKNRMKK 406
G+YE++R R+Q KER+ + K
Sbjct: 999 GVYERERNMRQQEKERRKQQSK 1020
>09_06_0252 +
21867179-21867283,21868362-21868526,21868621-21868730,
21868802-21868904,21868998-21869110,21869204-21869357,
21869476-21870633
Length = 635
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 484 FYLLTILTVTSLLGGRTYFRFLGTSYLLHSVLTFLTLFACRPLLFIQAVTS 332
FY T L +T L+ G YF ++ + L VLT T+ C F + + S
Sbjct: 581 FYFFTKLQITKLVSGILYFGYMLLASLAFFVLTG-TIGFCACFWFTRLIYS 630
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,800,452
Number of Sequences: 37544
Number of extensions: 248736
Number of successful extensions: 741
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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