Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I16
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)                30   0.89 
SB_12190| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.89 
SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.89 
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)                  29   2.1  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            29   2.1  
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)                     29   2.1  
SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)                      29   2.1  
SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_16273| Best HMM Match : SWIM (HMM E-Value=0.02)                     27   8.3  
SB_11775| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.33)          27   8.3  
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   8.3  
SB_23873| Best HMM Match : V-ATPase_C (HMM E-Value=6.6)                27   8.3  
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)                 27   8.3  

>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
          Length = 622

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 416 YLVPSSFCSYVPY-AVCVSASSFHTGRDERVCVLAQTSLLSLACRR 282
           +L PS  C  +P  A+C + +      DER C  A  SL +L CRR
Sbjct: 224 FLCPSGEC--IPTTALCNNENDCSDNADERNCQYANCSLNNLGCRR 267


>SB_12190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 463 TVTSLLGGRTYFRFLGTSYLLHSVLTFL 380
           T T LL   +  +F+GT YLLH VL  L
Sbjct: 385 TATGLLKQTSKLKFIGTVYLLHEVLPIL 412


>SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1111

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 463 TVTSLLGGRTYFRFLGTSYLLHSVLTFL 380
           T T LL   +  +F+GT YLLH VL  L
Sbjct: 727 TATGLLKQTSKLKFIGTVYLLHEVLPIL 754


>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
          Length = 166

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 320 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 412
           +H LA H   +++RP+   R+  K R++K+R
Sbjct: 79  RHGLASHDKKKRERPSLVARERMKKRLRKIR 109


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -2

Query: 243 VLKPNTKTTSGVTLYILASFSRISVLLTVGFPGCKTSHTICLRANN---LLVINLRVRIV 73
           V+  NT  ++ +T     +F  I +++T     C++S TI +  NN   +++I +    +
Sbjct: 137 VIINNTIISTKITTSTTTTFIIIIIIITTSSHHCRSSTTIVVTTNNTITIIIITITSTTI 196

Query: 72  XLFPLPT 52
              P P+
Sbjct: 197 ITMPSPS 203


>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
          Length = 1376

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 293  LDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKV 409
            LDL      KHR  RH   EKK    K RK +KN M+++
Sbjct: 1000 LDLLLAHATKHRGRRHRS-EKKEKANKARKCQKNYMRRL 1037


>SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)
          Length = 417

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 320 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 412
           +H LA H   +++RP+   R+  K R++K+R
Sbjct: 378 RHGLASHDKKKRERPSLVARERMKKRLRKIR 408


>SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 321 NTDSLVTACMKRRGRHANSVRNVRTE*RRYEVPRNLK 431
           N  +++     R  RH  ++R ++   R Y++PRNL+
Sbjct: 370 NMTAIIQRLYSRTSRHRRNLRIIQDFVRFYKIPRNLR 406


>SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 317 PKHRLARHGLYEKKRPTRKQRKERKNRMKK 406
           P+  L  H L ++ R  R+QR ER++R+K+
Sbjct: 21  PQQILFTHRLEQRYRVERRQRLERRHRVKR 50


>SB_16273| Best HMM Match : SWIM (HMM E-Value=0.02)
          Length = 817

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 228 TKTTSGVTLYILASFSRISVLLTVGFPGCKTSHTICLRANNLLVINLRVR 79
           TKT++GV+       SR+  +     PG  T+    L+ NNL  +N +++
Sbjct: 109 TKTSNGVSNVKEEILSRLRQIAHASTPGQYTAAVKSLKGNNLWTLNPKLQ 158


>SB_11775| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.33)
          Length = 666

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -2

Query: 249 KFVLKPNTKTTSGVTLYILASF--SRISVLL 163
           KF+L  NTK ++G+  +I A F  SR+  +L
Sbjct: 331 KFILNQNTKFSNGIRKFIFAQFYLSRLRKML 361


>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 3369

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 62  GNXXTIRTRKFMTNRLLARKQMVCDVL-HPGKPTVSKTEIREKLAK 196
           G+   +++R   TN L+ R +    V  HP +P  S+++ RE+  K
Sbjct: 413 GSSLFLKSRYLSTNLLILRAEHASTVDGHPREPKASRSQARERGGK 458


>SB_23873| Best HMM Match : V-ATPase_C (HMM E-Value=6.6)
          Length = 369

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -2

Query: 249 KFVLKPNTKTTSGVTLYILASFSRISVLLTVGFPGCKTSHTICLRANNLLVINLRVRIV 73
           +  L P+T  + G TLY+        V L  G+      H+I  +ANN +V N+   +V
Sbjct: 27  RVTLNPST-ASPGETLYVAVPKLSEGVTLVPGYLRVGFDHSISGQANNTVVNNVGRNLV 84


>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 1127

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 308  KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 412
            KFEPKH+  +     KKR +RK+  E + + + +R
Sbjct: 1060 KFEPKHK-KKGRSSSKKRHSRKKGHEEQQKKETIR 1093


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,839,290
Number of Sequences: 59808
Number of extensions: 290932
Number of successful extensions: 856
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)