Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I16
(490 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi... 167 5e-42
At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S ... 162 1e-40
At2g01690.2 68415.m00097 expressed protein 31 0.32
At2g01690.1 68415.m00096 expressed protein 31 0.32
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 29 1.3
At2g41790.1 68415.m05165 peptidase M16 family protein / insulina... 29 1.7
At5g26850.1 68418.m03203 expressed protein 28 3.9
At4g39930.1 68417.m05655 expressed protein 28 3.9
At3g15850.1 68416.m02005 fatty acid desaturase family protein si... 27 5.1
At1g80030.3 68414.m09368 DNAJ heat shock protein, putative simil... 27 5.1
At1g80030.2 68414.m09367 DNAJ heat shock protein, putative simil... 27 5.1
At1g80030.1 68414.m09366 DNAJ heat shock protein, putative simil... 27 5.1
At1g47480.1 68414.m05267 expressed protein similar to PrMC3 [Pin... 27 5.1
At3g59020.1 68416.m06578 importin beta-2 subunit family protein ... 27 6.8
At3g04740.1 68416.m00510 expressed protein (SWP1) 27 6.8
At1g62280.1 68414.m07026 C4-dicarboxylate transporter/malic acid... 27 6.8
At3g53780.2 68416.m05942 rhomboid family protein contains PFAM d... 27 9.0
At3g53780.1 68416.m05941 rhomboid family protein contains PFAM d... 27 9.0
At1g49230.1 68414.m05519 zinc finger (C3HC4-type RING finger) fa... 27 9.0
>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
to ribosomal protein S19 GB:445612 [Solanum tuberosum]
and similar to ribosomal protein S24 GB:4506703 [Homo
sapiens]
Length = 133
Score = 167 bits (405), Expect = 5e-42
Identities = 79/115 (68%), Positives = 96/115 (83%), Gaps = 1/115 (0%)
Frame = +2
Query: 74 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVFGFKTNF 250
TIRTRKFMTNRLL+RKQ V DVLHPG+ VSK E++EKLA+MY+V P+ +FVF F+T+F
Sbjct: 7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHF 66
Query: 251 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 415
GGGKS+GF LIYDT++ AKKFEPK+RL R+GL K +RKQ KERKNR KK+RG
Sbjct: 67 GGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRG 121
>At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S
ribosomal protein S19, Cyanophora paradoxa,
EMBL:CPA245654
Length = 133
Score = 162 bits (394), Expect = 1e-40
Identities = 77/115 (66%), Positives = 94/115 (81%), Gaps = 1/115 (0%)
Frame = +2
Query: 74 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVFGFKTNF 250
TIRTR FMTNRLLARKQ V DVLHPG+ VSK E++EKLA+MY+V P+ +F F F+T+F
Sbjct: 7 TIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHF 66
Query: 251 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 415
GGGKS+G+ LIYDT++ AKKFEPK+RL R+GL K +RKQ KERKNR KK+RG
Sbjct: 67 GGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRG 121
>At2g01690.2 68415.m00097 expressed protein
Length = 744
Score = 31.5 bits (68), Expect = 0.32
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 160 GRFSWMQDIAYHLLAR--QQSVGHKFTRTNRRXVPTSNF 50
GR++W+ Y LL QQS K RT + VPT +F
Sbjct: 576 GRYTWLLKTLYGLLMLLPQQSAAFKILRTRLKTVPTYSF 614
>At2g01690.1 68415.m00096 expressed protein
Length = 743
Score = 31.5 bits (68), Expect = 0.32
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 160 GRFSWMQDIAYHLLAR--QQSVGHKFTRTNRRXVPTSNF 50
GR++W+ Y LL QQS K RT + VPT +F
Sbjct: 575 GRYTWLLKTLYGLLMLLPQQSAAFKILRTRLKTVPTYSF 613
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 215 DVVFVFGFKTNFGGGKSTGFALIYDT 292
DV FV GF T+F G GFA+ + T
Sbjct: 251 DVGFVVGFVTSFAAGLDVGFAIDFAT 276
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 224 FVFGFKTNFGGGKSTGFALIYDT 292
FV GF T+F G TGF + +DT
Sbjct: 110 FVTGFATDFDVGFDTGFTIGFDT 132
>At2g41790.1 68415.m05165 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain; similar to insulin-degrading enzyme
(Insulysin, Insulinase, Insulin protease) [Mouse]
SWISS-PROT:Q9JHR7
Length = 970
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 274 KSGRFATTEVRLETEHENYVWRHFVHFSELFTDLSFADGRFSWMQ--DIAYHLLA 116
K RFA + + E++NY +R H + + L D + W + D+ HL A
Sbjct: 615 KPDRFAVIKETVTKEYQNYKFRQPYHQAMYYCSLILQDQTWPWTEELDVLSHLEA 669
>At5g26850.1 68418.m03203 expressed protein
Length = 919
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 95 MTNRLLARKQMVCDVLHPGKPTVSKTEIRE-KLAKMYKVTPDVVFVFGFKTN 247
M +++ ++ D++ P +SK E + K+ + + TPD F+FG + N
Sbjct: 702 MRSKVELSNTIITDIVAKNLPKLSKLEEADVKMQILEQFTPDDAFMFGSRPN 753
>At4g39930.1 68417.m05655 expressed protein
Length = 116
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 105 LLVINLRVRIVXLFPLPTSFXD*FSEIS 22
LL ++ + +V FP+P++F D FS +S
Sbjct: 59 LLFLSKKFSLVGNFPIPSNFADQFSSVS 86
>At3g15850.1 68416.m02005 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 371
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 433 YFRFLGTSYLLHSVLTFLTLFACRPLLFIQAVTSESVFWL 314
++RFL T+Y+LH + + L+A FI + W+
Sbjct: 237 FYRFLRTTYILHPLALAVALYAMGGFPFIVWGMGVRIVWV 276
>At1g80030.3 68414.m09368 DNAJ heat shock protein, putative similar
to SP|Q05646 Chaperone protein dnaJ {Erysipelothrix
rhusiopathiae}; contains Pfam profiles PF00226: DnaJ
domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
central domain (4 repeats)
Length = 500
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 277 SKSGRFATTEVRLETEHENYVWRHFVHFSELFTDLSFADGRFSWMQD 137
S++ + E E E ENY+W + F+ S A+G W++D
Sbjct: 457 SENKKDEVKEENEEPEQENYLWNNIKEFAG-----SVANGALKWLRD 498
>At1g80030.2 68414.m09367 DNAJ heat shock protein, putative similar
to SP|Q05646 Chaperone protein dnaJ {Erysipelothrix
rhusiopathiae}; contains Pfam profiles PF00226: DnaJ
domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
central domain (4 repeats)
Length = 500
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 277 SKSGRFATTEVRLETEHENYVWRHFVHFSELFTDLSFADGRFSWMQD 137
S++ + E E E ENY+W + F+ S A+G W++D
Sbjct: 457 SENKKDEVKEENEEPEQENYLWNNIKEFAG-----SVANGALKWLRD 498
>At1g80030.1 68414.m09366 DNAJ heat shock protein, putative similar
to SP|Q05646 Chaperone protein dnaJ {Erysipelothrix
rhusiopathiae}; contains Pfam profiles PF00226: DnaJ
domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
central domain (4 repeats)
Length = 500
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 277 SKSGRFATTEVRLETEHENYVWRHFVHFSELFTDLSFADGRFSWMQD 137
S++ + E E E ENY+W + F+ S A+G W++D
Sbjct: 457 SENKKDEVKEENEEPEQENYLWNNIKEFAG-----SVANGALKWLRD 498
>At1g47480.1 68414.m05267 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 314
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2
Query: 171 VLLTVGFPGCKTSHTICLRANNLLVINLRVRIVXLFPLPTSFXD 40
++ + FP TS + N++ +++ R+ PLPT++ D
Sbjct: 84 LISSTSFPSYHTSLNKIVNQANVIAVSVNYRLAPEHPLPTAYED 127
>At3g59020.1 68416.m06578 importin beta-2 subunit family protein
similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
GI:7542336; contains Pfam profile PF03810: Importin-beta
N-terminal domain
Length = 1112
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 359 SSFHTGRDERVCVLAQTSLLSLACRRL 279
S+F D++VC+L TSL SL +L
Sbjct: 916 SNFKREHDKKVCILGLTSLFSLPAGQL 942
>At3g04740.1 68416.m00510 expressed protein (SWP1)
Length = 1703
Score = 27.1 bits (57), Expect = 6.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -2
Query: 174 SVLLTVGFPGCKTSHTICL 118
S +LT+GFP C++SH + +
Sbjct: 522 SSILTLGFPDCESSHLLLM 540
>At1g62280.1 68414.m07026 C4-dicarboxylate transporter/malic acid
transport family protein contains Pfam profile PF03595:
C4-dicarboxylate transporter/malic acid transport
protein
Length = 385
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/64 (21%), Positives = 34/64 (53%)
Frame = -1
Query: 433 YFRFLGTSYLLHSVLTFLTLFACRPLLFIQAVTSESVFWLKLLC*V*RVVD*SKSGRFAT 254
+ ++G +YL +++L + P++ +V +++FW+ + + +D G++ T
Sbjct: 115 FLHYIGVNYLYAPSISWLLMLQSAPMMEPNSVLYQTLFWIFAVPVL--TLDIKLYGQWFT 172
Query: 253 TEVR 242
TE R
Sbjct: 173 TEKR 176
>At3g53780.2 68416.m05942 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 394
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -3
Query: 395 CSYVPYAVCVSASSFHTGRDERVCVLAQT-SLLSLACRR 282
CS+ Y CV S + R+ C Q + LS+ C R
Sbjct: 330 CSWCHYLSCVPTSKWSCNREPASCTTTQLGNQLSMTCLR 368
>At3g53780.1 68416.m05941 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 270
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -3
Query: 395 CSYVPYAVCVSASSFHTGRDERVCVLAQT-SLLSLACRR 282
CS+ Y CV S + R+ C Q + LS+ C R
Sbjct: 206 CSWCHYLSCVPTSKWSCNREPASCTTTQLGNQLSMTCLR 244
>At1g49230.1 68414.m05519 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 219
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -2
Query: 234 PNTKTTSGVTLYILASFSRISVLLTVGFPGCKTSHTICL 118
P T +GV L SF +S + PG T ICL
Sbjct: 97 PVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICL 135
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,225,891
Number of Sequences: 28952
Number of extensions: 200261
Number of successful extensions: 640
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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