Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I15
(460 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) 90 9e-19
SB_39600| Best HMM Match : Sushi (HMM E-Value=0) 34 0.049
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_48395| Best HMM Match : MAM (HMM E-Value=0) 29 2.4
SB_44746| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9) 29 2.4
SB_27957| Best HMM Match : PHD (HMM E-Value=8.2e-15) 28 3.2
SB_27464| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_4294| Best HMM Match : DUF622 (HMM E-Value=7) 28 4.3
SB_59241| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30) 28 4.3
SB_45972| Best HMM Match : Ribosomal_L21e (HMM E-Value=9) 28 4.3
SB_8458| Best HMM Match : Ribosomal_L21e (HMM E-Value=9) 28 4.3
SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_57111| Best HMM Match : Drf_FH1 (HMM E-Value=3.3) 27 5.6
SB_34061| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 27 5.6
SB_54687| Best HMM Match : Trp_Tyr_perm (HMM E-Value=2.2) 27 7.5
SB_47665| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_36313| Best HMM Match : Crl (HMM E-Value=5.1) 27 7.5
SB_35201| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_30312| Best HMM Match : rve (HMM E-Value=5.6e-15) 27 7.5
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 27 7.5
SB_22626| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_19584| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_8339| Best HMM Match : rve (HMM E-Value=5.4e-31) 27 7.5
SB_6877| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30) 27 7.5
SB_44242| Best HMM Match : SATase_N (HMM E-Value=0.27) 27 7.5
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 27 7.5
SB_8293| Best HMM Match : zf-C2H2 (HMM E-Value=0.32) 27 7.5
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14) 27 9.9
SB_14965| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23) 27 9.9
>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 89.8 bits (213), Expect = 9e-19
Identities = 50/96 (52%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Frame = +3
Query: 117 TALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXX 293
TA +RP + +VP +P + A R FQT+S +D+DSAAKF
Sbjct: 61 TAAIRPQSQALVKA-VVPASPLLGALASRGFQTSSAVQDVDSAAKFIGAGAATVGAAGSG 119
Query: 294 XXXXXXFGSLIIGYARNPSLKQQLFSYAILGFALSE 401
FGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 120 AGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 155
>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1368
Score = 34.3 bits (75), Expect = 0.049
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = -3
Query: 260 STNEFGSRVNVFGDRG-GLEGAHS**LSRCN--WNNLCV-CRHCCEWSHKSCVAEDSSPG 93
S + VN+ D G L G+HS + + N W+ C+ CE + S S G
Sbjct: 560 SVTTYRGVVNITCDTGFHLIGSHSR-VCQANGTWSGTTTTCKEKCE-RYPSMDVSQCSMG 617
Query: 92 CRGDQSCGIQHFCVLRGATTDNKEH 18
C DQ C H C G T N H
Sbjct: 618 CDVDQDCPPNHMCRCDGMQTTNNNH 642
>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 114 NTALVRPLAAVPTHTQIVPVAPA 182
NT LVRPL +P T P +PA
Sbjct: 1221 NTLLVRPLETIPAPTPTTPTSPA 1243
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 117 TALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSVTKDIDSAA 245
T LVRPL +P T P +PA ++ +T K+ + A
Sbjct: 241 TLLVRPLETIPAPTPTTPTSPATPASGPPIRTPIPVKETSTTA 283
>SB_48395| Best HMM Match : MAM (HMM E-Value=0)
Length = 901
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -3
Query: 173 NWNNLCVCRHCC-EWSHKSCVAEDSSPGCRGDQSCGIQ 63
NW C C ++ + C AED + C G GI+
Sbjct: 652 NWGAFGPCSETCYKYRQRFCTAEDKAANCPGADMFGIE 689
>SB_44746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 457
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 289 PERVLERYSVPSSLVMPGTPPLNNSCSHMPS 381
P+R + +PS + + TPPL +C + PS
Sbjct: 283 PQRSMSILPLPSEVRVDTTPPLRGACRYYPS 313
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 289 PERVLERYSVPSSLVMPGTPPLNNSCSHMPS 381
P+R + +PS + TPPL +C + PS
Sbjct: 221 PQRSMSILPLPSGARVDTTPPLREACRYYPS 251
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 289 PERVLERYSVPSSLVMPGTPPLNNSCSHMPS 381
P+R + +PS + TPPL +C + PS
Sbjct: 132 PQRCVSILPLPSEEHVDTTPPLRGACRYYPS 162
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 289 PERVLERYSVPSSLVMPGTPPLNNSCSHMPS 381
P+R + +PS + TPPL +C + PS
Sbjct: 252 PQRSVSILPLPSEKHVDTTPPLRGACRYYPS 282
>SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 461
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 117 TALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSVTKDIDSAA 245
T LVRPL P P +PA ++V +T K+ S A
Sbjct: 19 TLLVRPLETTPAPAPTTPTSPATPASVAPIRTPIPLKETPSPA 61
>SB_27957| Best HMM Match : PHD (HMM E-Value=8.2e-15)
Length = 111
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 152 CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFC 54
C C EW H C+ S G + ++S GI++ C
Sbjct: 62 CDRCDEWFHGDCIGITMSQGRQMEKS-GIEYNC 93
>SB_27464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 111 SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 230
S T + P+AA P TQ VP+A + R QT S D
Sbjct: 58 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 98
>SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 111 SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 230
S T + P+AA P TQ VP+A + R QT S D
Sbjct: 640 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 680
>SB_4294| Best HMM Match : DUF622 (HMM E-Value=7)
Length = 360
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 140 CEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDNKEHREGPR 3
CE +S ++DSSPG D + R NK+ R+ PR
Sbjct: 245 CEEIGESRSSDDSSPGACADSLLQVPRQASNRAINIHNKQIRKNPR 290
>SB_59241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 111 SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 230
S T + P+AA P TQ VP+A + R QT S D
Sbjct: 48 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 88
>SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 682
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 111 SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 230
S T + P+AA P TQ VP+A + R QT S D
Sbjct: 639 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 679
>SB_45972| Best HMM Match : Ribosomal_L21e (HMM E-Value=9)
Length = 246
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 111 SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 230
S T + P+AA P TQ VP+A + R QT S D
Sbjct: 203 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 243
>SB_8458| Best HMM Match : Ribosomal_L21e (HMM E-Value=9)
Length = 195
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 111 SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 230
S T + P+AA P TQ VP+A + R QT S D
Sbjct: 152 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 192
>SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +2
Query: 20 VLCCQSSHPSKHKNAVCRKIDRPCSQDCYLQQHSSCATTRSSAYTH 157
V+C +SS P+K + + CS + + S + R S + H
Sbjct: 292 VICSESSTPTKDEKIAKSSVSSECSSSPHEAEESRKSKDRQSVFGH 337
>SB_57111| Best HMM Match : Drf_FH1 (HMM E-Value=3.3)
Length = 451
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 313 SVPSSLVM-PGTPPLNNSCSHMPSWVSPCLRLWVS 414
+VP +++ PG P NN S MPS +SP L +V+
Sbjct: 66 NVPYAVIPNPGVPLGNNFSSVMPSTMSPSLPFFVA 100
>SB_34061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 27.5 bits (58), Expect = 5.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 170 WNNLCVCRHCCEWSHKSCV 114
W C+CR +W H+SC+
Sbjct: 40 WVKPCLCRGTTKWVHQSCL 58
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 111 SNTALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSV 221
+N+ ++ PL +VP +T ++P A +A T + V
Sbjct: 78 ANSTMILPLTSVPYNTTLIPAPNATSTAATTMSPSYV 114
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 111 SNTALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSV 221
+N+ ++ PL +VP +T ++P A +A T + V
Sbjct: 480 ANSTMILPLTSVPYNTTLIPAPNATSTAATTMSPSYV 516
>SB_54687| Best HMM Match : Trp_Tyr_perm (HMM E-Value=2.2)
Length = 369
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 158 CVCRHCCEWSHKSCVAEDSSPGC 90
C+C CCE K A+D S GC
Sbjct: 346 CICVMCCECKKKD--AKDGSAGC 366
>SB_47665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 111 SNTALVRPLAAVPTHTQIVPVAPAQ 185
S T + P+AA P TQ VP+A +
Sbjct: 19 STTPICEPVAATPDDTQSVPIATTE 43
>SB_36313| Best HMM Match : Crl (HMM E-Value=5.1)
Length = 442
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 117 TALVRPLAAVPTHTQIVPVAPA 182
T LVRPL +P T P +PA
Sbjct: 115 TLLVRPLETIPAPTPTTPTSPA 136
>SB_35201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 111 SNTALVRPLAAVPTHTQIVPVAPAQ 185
S T + P+AA P TQ VP+A +
Sbjct: 181 STTPICEPVAATPDDTQSVPIATTE 205
>SB_30312| Best HMM Match : rve (HMM E-Value=5.6e-15)
Length = 385
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 111 SNTALVRPLAAVPTHTQIVPVAPAQ 185
S T + P+AA P TQ VP+A +
Sbjct: 348 STTPICEPVAATPDDTQSVPIATTE 372
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 111 SNTALVRPLAAVPTHTQIVPVAPAQ 185
S T + P+AA P TQ VP+A +
Sbjct: 548 STTPICEPVAATPDDTQSVPIATTE 572
>SB_22626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 111 SNTALVRPLAAVPTHTQIVPVAPAQ 185
S T + P+AA P TQ VP+A +
Sbjct: 58 STTPICEPVAATPDDTQSVPIATTE 82
>SB_19584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 62
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 111 SNTALVRPLAAVPTHTQIVPVAPAQ 185
S T + P+AA P TQ VP+A +
Sbjct: 19 STTPICEPVAATPDDTQSVPIATTE 43
>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 117 TALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSVTKDIDSAA 245
T LVRPL +P P++PA ++ +T K+ +AA
Sbjct: 637 TLLVRPLETIPAPAPTKPISPATPASGPPTRTPIPLKETPTAA 679
>SB_8339| Best HMM Match : rve (HMM E-Value=5.4e-31)
Length = 351
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 111 SNTALVRPLAAVPTHTQIVPVAPAQ 185
S T + P+AA P TQ VP+A +
Sbjct: 308 STTPICEPVAATPDDTQSVPIATTE 332
>SB_6877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 117 TALVRPLAAVPTHTQIVPVAPA 182
T LVRPL +P T P +PA
Sbjct: 109 TLLVRPLETIPAPTPTTPTSPA 130
>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 1280
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 111 SNTALVRPLAAVPTHTQIVPVAPAQ 185
S T + P+AA P TQ VP+A +
Sbjct: 1097 STTPICEPVAATPDDTQSVPIATTE 1121
>SB_44242| Best HMM Match : SATase_N (HMM E-Value=0.27)
Length = 426
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 286 DPERVLERYSVPSSLVMPGTPPLNNSCSHMPSWVSPCLR 402
DP E Y P P T PL N ++ W++ CLR
Sbjct: 20 DPNSDEEGYR-PHMRSFPATIPLRNIQANCEEWINMCLR 57
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 111 SNTALVRPLAAVPTHTQIVPVAPAQ 185
S T + P+AA P TQ VP+A +
Sbjct: 1254 STTPICEPVAATPDDTQSVPIATTE 1278
>SB_8293| Best HMM Match : zf-C2H2 (HMM E-Value=0.32)
Length = 316
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 111 SNTALVRPLAAVPTHTQIVPVAPAQ 185
S T + P+AA P TQ VP+A +
Sbjct: 58 STTPICEPVAATPDDTQSVPIATTE 82
>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/32 (31%), Positives = 13/32 (40%)
Frame = +2
Query: 68 CRKIDRPCSQDCYLQQHSSCATTRSSAYTHTD 163
C+ D PC++ C SC T TD
Sbjct: 1321 CKANDIPCTEACLCTSEDSCENPHKGTETATD 1352
>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
Length = 1197
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 47 SKHKNAVCRKIDRPCSQDCY 106
++H+ +VCRKI SQ CY
Sbjct: 230 NRHRTSVCRKILDAASQFCY 249
>SB_14965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 117 TALVRPLAAVPTHTQIVPVAPA 182
T LVRPL +P T P +PA
Sbjct: 213 TLLVRPLETIPAPTLTTPTSPA 234
>SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23)
Length = 684
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 152 CRHCCEWSHKSCVAEDSSPGCRGDQSC 72
C C +W H SCV PG GD C
Sbjct: 635 CDSCDKWYHGSCVGVLDDPG--GDWYC 659
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,865,099
Number of Sequences: 59808
Number of extensions: 294409
Number of successful extensions: 1281
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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