Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I15
(460 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su... 44 7e-05
At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger) fa... 32 0.16
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 31 0.28
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 31 0.28
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family... 31 0.28
At3g13050.1 68416.m01626 transporter-related low similarity to a... 29 1.5
At1g69280.1 68414.m07943 expressed protein 29 2.0
At4g39100.1 68417.m05536 PHD finger family protein / bromo-adjac... 28 2.6
At2g34940.1 68415.m04289 vacuolar sorting receptor, putative sim... 28 2.6
At1g48490.1 68414.m05420 protein kinase, putative similar to inc... 28 3.5
At5g16700.1 68418.m01955 glycosyl hydrolase family 5 protein / c... 27 4.6
At5g04310.1 68418.m00423 pectate lyase family protein similar to... 27 4.6
At4g28610.1 68417.m04091 myb family transcription factor, putati... 27 4.6
At5g45520.1 68418.m05591 hypothetical protein 27 8.1
At5g11520.1 68418.m01344 aspartate aminotransferase, chloroplast... 27 8.1
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 27 8.1
At4g22860.1 68417.m03302 expressed protein 27 8.1
At4g17850.1 68417.m02662 hypothetical protein 27 8.1
At3g05700.1 68416.m00637 drought-responsive family protein conta... 27 8.1
>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
subunit family protein similar to ATPase subunit 9
[Arabidopsis thaliana] GI:15215920; contains Pfam
profile PF00137: ATP synthase subunit C
Length = 85
Score = 43.6 bits (98), Expect = 7e-05
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = +3
Query: 312 FGSLIIGYARNPSLKQQLFSYAILGFALSE 401
F SLI ARNPSL +Q F YAILGFAL+E
Sbjct: 39 FSSLIHSVARNPSLAKQSFGYAILGFALTE 68
>At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger)
family protein contains Pfam PF03126: Plus-3 domain;
contains Pfam PF02201: BAF60b domain of the SWIB
complex; contains Pfam PF00628: PHD-finger domain;
contains Prosite Zinc finger, C3HC4 type (RING finger),
signature; similar to CPRF interacting protein
(GI:9588690) [Petroselinum crispum]
Length = 571
Score = 32.3 bits (70), Expect = 0.16
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 161 LCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVL 48
LC + C + H+SCV +DSS GD + H C L
Sbjct: 36 LCDFKDCPKVYHESCVEKDSSASKNGDSYICMWHSCYL 73
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 31.5 bits (68), Expect = 0.28
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = -3
Query: 356 FKGGVP-GITNDEGTEYRSNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LS 180
F G+P G T GT Y N G S +TN FG V G GG + ++
Sbjct: 258 FDQGLPTGFTG--GTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYEGGNGGGNSSFFSSVT 315
Query: 179 RCNWNN 162
R W N
Sbjct: 316 RNLWGN 321
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 31.5 bits (68), Expect = 0.28
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = -3
Query: 356 FKGGVP-GITNDEGTEYRSNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LS 180
F G+P G T GT Y N G S +TN FG V G GG + ++
Sbjct: 258 FDQGLPTGFTG--GTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYEGGNGGGNSSFFSSVT 315
Query: 179 RCNWNN 162
R W N
Sbjct: 316 RNLWGN 321
>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
protein similar to SP|Q28141 ATP-dependent RNA helicase
A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
taurus}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1015
Score = 31.5 bits (68), Expect = 0.28
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -3
Query: 176 CNWNNLCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATT 33
CN C H + + +C SS GCR +SC H +R TT
Sbjct: 741 CNRGGQCTFTHTLQSTRPACKFFASSQGCRNGESCLFSH--AMRRRTT 786
>At3g13050.1 68416.m01626 transporter-related low similarity to
apical organic cation transporter [Sus scrofa]
GI:2062135, SP|Q02563 Synaptic vesicle protein 2 (SV2)
{Rattus norvegicus}; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 500
Score = 29.1 bits (62), Expect = 1.5
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -3
Query: 455 LESELQKERHHKTEETHSLRQGETQDGI 372
LE+EL++ ++ TE TH L+ GE+ + +
Sbjct: 238 LETELEENKNIPTENTHLLKAGESGEAV 265
>At1g69280.1 68414.m07943 expressed protein
Length = 400
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 176 CNWNNLCVCRHCCEWSHKSCVAEDSS 99
C++N+ C CC WS SC SS
Sbjct: 344 CDYNSSCGWLFCCHWSCWSCCCCSSS 369
>At4g39100.1 68417.m05536 PHD finger family protein / bromo-adjacent
homology (BAH) domain-containing protein contains Pfam
domain, PF00628: PHD-finger and PF01426: BAH domain
Length = 228
Score = 28.3 bits (60), Expect = 2.6
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Frame = -3
Query: 314 EYRSNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LSRC----NWNNLCV-C 150
E + S SSY+ ++F R G + +C N ++L V C
Sbjct: 98 EGKCKVHSFSSYTKLDSVGNDDFFCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQC 157
Query: 149 RHCCEWSHKSCV 114
C EW H SC+
Sbjct: 158 EECSEWFHPSCI 169
>At2g34940.1 68415.m04289 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 618
Score = 28.3 bits (60), Expect = 2.6
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = -3
Query: 305 SNTRSGSSYSNCRCASTNEFGSRVNVFGDRGGLEGAHS**LSRCNWNNLCVCRHC-CE-- 135
S TR G ++S+C + T+ + GD GL+ + C + C C C C+
Sbjct: 478 SETRKGLTFSSCSDSETSGCRCPLGFLGD--GLKCED---IDECKEKSACKCDGCKCKNN 532
Query: 134 WSHKSCVAEDSSPGCRGDQSC 72
W C ++S + + +C
Sbjct: 533 WGGYECKCSNNSIYMKEEDTC 553
>At1g48490.1 68414.m05420 protein kinase, putative similar to
incomplete root hair elongation (IRE) [Arabidopsis
thaliana] gi|6729346|dbj|BAA89783
Length = 878
Score = 27.9 bits (59), Expect = 3.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 134 WSHKSCVAEDSSPGCR 87
W H+SC++E+SS CR
Sbjct: 181 WGHQSCISEESSIICR 196
>At5g16700.1 68418.m01955 glycosyl hydrolase family 5 protein /
cellulase family protein cellulase (EC 3.2.1.4)
precursor - Xanthomonas campestris pv. campestris,
PIR:JH0158
Length = 488
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 347 GVPGITNDEGTEYRSNTRSGSSYSNCRCA 261
G P I ++ GT+ R SG+ Y NC A
Sbjct: 304 GFPLILSEFGTDQRGGDMSGNRYMNCLVA 332
>At5g04310.1 68418.m00423 pectate lyase family protein similar to
pectate lyase GP:14531296 from [Fragaria x ananassa]
Length = 518
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 350 GGVPGITNDEGTEYRSNTRSGSSYSNCRCASTNEFGSRVNVFGDRGG 210
G PGITN GT R ++SG + S ++ G +FG+ G
Sbjct: 446 GSFPGITNGGGTITRGYSKSGPAGGG--SGSDSDDGLFTLIFGNNSG 490
>At4g28610.1 68417.m04091 myb family transcription factor, putative
/ phosphate starvation response regulator, putative
(PHR1) contains Pfam profile: PF00249 myb-like
DNA-binding domain; identical to cDNA phosphate
starvation response regulator 1 (phr1 gene) GI:15384675
Length = 409
Score = 27.5 bits (58), Expect = 4.6
Identities = 18/69 (26%), Positives = 36/69 (52%)
Frame = -3
Query: 455 LESELQKERHHKTEETHSLRQGETQDGI*EQLLFKGGVPGITNDEGTEYRSNTRSGSSYS 276
L+ E+QK+ H + E +L+ + G Q++F+ G+T +GT S++ + S
Sbjct: 319 LQMEVQKQLHEQLEIQRNLQLRIEEQGKYLQMMFEKQNSGLT--KGTASTSDSAAKSEQE 376
Query: 275 NCRCASTNE 249
+ + A + E
Sbjct: 377 DKKTADSKE 385
>At5g45520.1 68418.m05591 hypothetical protein
Length = 1167
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3
Query: 446 ELQKERHHKTEETHSLRQGETQDGI*EQLLFKGGVPGITNDEGTEYRS 303
+ KE EET G+ DGI E+ + G +DEG E RS
Sbjct: 595 QTSKEEKGNVEETGKQEDGDQGDGINEEANLEDGK---KHDEGKEERS 639
>At5g11520.1 68418.m01344 aspartate aminotransferase, chloroplast /
transaminase A (ASP3) (YLS4) identical to SP|P46644
Aspartate aminotransferase, chloroplast precursor (EC
2.6.1.1) (Transaminase A) {Arabidopsis thaliana};
identical to cDNA YLS4 mRNA for aspartate
aminotransferase (ASP3), partial cds GI:13122285
Length = 449
Score = 26.6 bits (56), Expect = 8.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 337 PGTPPLNNSCSHMPSWVSPCLRLW 408
PG+ L ++C+H P+ V P ++ W
Sbjct: 219 PGSIVLLHACAHNPTGVDPTIQQW 242
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 404 SLRQGETQDGI*EQLLFKGGVPGITNDEGTEYRSNTRSGS 285
S+RQ E QD + ++ L KGG T+ G + + + G+
Sbjct: 120 SMRQKEKQDSVEQKPLKKGGDSSETSSRGRHDKLDDKGGA 159
>At4g22860.1 68417.m03302 expressed protein
Length = 509
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 113 QHSSCATTRSSAYTHTD 163
QHSS TTRS AY +D
Sbjct: 330 QHSSAVTTRSHAYKESD 346
>At4g17850.1 68417.m02662 hypothetical protein
Length = 187
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 2 HEVLLGVLCCQSSHPSKHKNAVCRKIDR-PCSQDCY 106
+E LL V+CC ++H + KID+ P S CY
Sbjct: 48 YEYLL-VICCNCGVGAEHTYCMMEKIDKVPDSWSCY 82
>At3g05700.1 68416.m00637 drought-responsive family protein contains
similarity to drought-induced mRNA, Di19 [Arabidopsis
thaliana] gi|469110|emb|CAA55321
Length = 181
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = +2
Query: 23 LCCQ--SSHPSKHKNAVCRKIDRPCSQDCYLQQHSSCATTRSSA 148
LCC HP + KN VC D L SSC + SS+
Sbjct: 58 LCCHIDEDHPMEAKNGVCPVCAVRVGVDMSLFGGSSCIVSSSSS 101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,254,384
Number of Sequences: 28952
Number of extensions: 175800
Number of successful extensions: 587
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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