Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I14
         (547 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   7.0  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   9.3  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   9.3  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   9.3  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 342 KILETGTDASATNDDTTEVYFS 407
           +++  GT     + D TEVYFS
Sbjct: 79  EMIHRGTFQGDIHRDLTEVYFS 100


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 154 EYWTNSF 134
           +YWTNSF
Sbjct: 9   DYWTNSF 15


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 154 EYWTNSF 134
           +YWTNSF
Sbjct: 9   DYWTNSF 15


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 154 EYWTNSF 134
           +YWTNSF
Sbjct: 9   DYWTNSF 15


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,311
Number of Sequences: 336
Number of extensions: 2111
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)