Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I14
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45619| Best HMM Match : M (HMM E-Value=0.01)                        32   0.35 
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   28   5.7  
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_7061| Best HMM Match : Carn_acyltransf (HMM E-Value=2.6e-16)        27   7.6  

>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
          Length = 1315

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +3

Query: 327  NGVATKILETGTDASA---TNDDTTEVYFSAKDGIYVFDAKTNKTDKYGTNTDSLIGIVK 497
            N  A +++++ +DA     +N D   V  S  D I V D+ +++     +N+D  I ++ 
Sbjct: 1197 NSDAIRVMDSNSDAIRVMDSNSDAIRVMDSNSDAIRVMDSNSDEIRAMDSNSDE-IRVMD 1255

Query: 498  TNGSDVLYVLTENHD 542
            +N SD + V+  N D
Sbjct: 1256 SN-SDAIRVMDSNSD 1269



 Score = 28.7 bits (61), Expect = 3.3
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
 Frame = +3

Query: 264  FVEADVNDKGEKEYKGLYSLKNGVATKILETGTDASA---TNDDTTEVYFSAKDGIYVFD 434
            FV          E + +YS  N    + + + +DA     +N D   V  S  D I V D
Sbjct: 1128 FVTKATKVSNSNEIREMYS--NSDEMREMYSNSDAIRVMDSNSDAIRVMDSNSDAIRVMD 1185

Query: 435  AKTNKTDKYGTNTDSLIGIVKTNGSDVLYVLTENHD 542
            + +++     +N+D+ I ++ +N SD + V+  N D
Sbjct: 1186 SNSDEIRVMDSNSDA-IRVMDSN-SDAIRVMDSNSD 1219



 Score = 28.3 bits (60), Expect = 4.3
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = +3

Query: 279  VNDKGEKEYKGLYSLKNGVATKILETGTDASA---TNDDTTEVYFSAKDGIYVFDAKTNK 449
            V D    E + + S  N    +++++ +DA     +N D   V  S  D I V D+ ++ 
Sbjct: 1233 VMDSNSDEIRAMDS--NSDEIRVMDSNSDAIRVMDSNSDAIRVMDSYSDEIRVMDSNSDA 1290

Query: 450  TDKYGTNTDSLIGIVKTNGSDV 515
                G+N+D+ I ++ +N  ++
Sbjct: 1291 IRVMGSNSDA-IRVMDSNSDEI 1311


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +3

Query: 330 GVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTDKYGTNTDSLIG 488
           G+    +    +++A  D ++  YF AKD IY F  K    + +     ++ G
Sbjct: 84  GIVFVSINNTNESNAAVDVSSGPYFPAKDRIYSFQLKGKSKEPFSLTIQTVTG 136


>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 152 VLDKFVYE*FRRYYELLIIILSNW 81
           +LD F Y  +RR+ +LLI I++ W
Sbjct: 23  ILDVFYYPTWRRFKDLLIAIIAPW 46


>SB_7061| Best HMM Match : Carn_acyltransf (HMM E-Value=2.6e-16)
          Length = 324

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -1

Query: 193 LRGTVRLTMSYLDEYWTNSFMNSSDDTM 110
           L+   R T +Y+ E+W+N+F+++ D  +
Sbjct: 59  LKERERTTENYVTEWWSNNFLSARDSVV 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,769,332
Number of Sequences: 59808
Number of extensions: 263505
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)