Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I14
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g05410.1 68417.m00823 transducin family protein / WD-40 repea...    31   0.66 
At5g38690.1 68418.m04678 expressed protein                             29   2.0  
At2g32235.1 68415.m03939 expressed protein                             28   3.5  
At3g63260.2 68416.m07109 protein kinase, putative (MRK1) identic...    28   4.7  
At3g63260.1 68416.m07108 protein kinase, putative (MRK1) identic...    28   4.7  
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil...    27   6.2  
At2g12875.1 68415.m01402 hypothetical protein                          27   6.2  

>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400); U3
           snoRNP-associated 55-kDa protein, Homo sapiens,
           gb:NP_004695;  Vegetatible incompatibility protein
           HET-E-1 (SP:Q00808) [Podospora anserina]
          Length = 504

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 372 ATNDDTTEVYFSAKDG-IYVFDAKTNKTDKYGTNTDSLIGIVKTNGSDVLYVLTENH 539
           A +DD +  + ++KDG I  +D  + KTDKY   +D    I+K++G  +     +NH
Sbjct: 168 ALSDDDSRGFSASKDGTIMHWDVSSGKTDKYIWPSDE---ILKSHGMKLREPRNKNH 221


>At5g38690.1 68418.m04678 expressed protein
          Length = 572

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 270 EADVNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNK 449
           E  +  K + E       KNG+   I E     S  N +T EVY   ++ I +   K+  
Sbjct: 431 EKQLKQKLQDELAQAVKAKNGIPLLITEHDAIVSRINAETQEVYSEMQNAIDMLSKKSQG 490

Query: 450 TD 455
           +D
Sbjct: 491 SD 492


>At2g32235.1 68415.m03939 expressed protein
          Length = 310

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +3

Query: 318 SLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTDKYGTNTDSLIGIVK 497
           SL     +  +  G  A+  + D  ++ +  KDG+   D   NK  KYG    S  G VK
Sbjct: 193 SLLGSSRSNAIPEGDLANPESSDANKMLYIIKDGVRELDQWCNKLLKYGEAVSS--GSVK 250

Query: 498 TNGS 509
            + S
Sbjct: 251 QDDS 254


>At3g63260.2 68416.m07109 protein kinase, putative (MRK1) identical
           to ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
          Length = 344

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +3

Query: 303 YKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVF 431
           Y+G+Y+ +  VA K+L+ G D  AT  +TT +  S +  + V+
Sbjct: 98  YRGVYAGQE-VAVKVLDWGEDGYATPAETTALRASFEQEVAVW 139


>At3g63260.1 68416.m07108 protein kinase, putative (MRK1) identical
           to ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
          Length = 391

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +3

Query: 303 YKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVF 431
           Y+G+Y+ +  VA K+L+ G D  AT  +TT +  S +  + V+
Sbjct: 98  YRGVYAGQE-VAVKVLDWGEDGYATPAETTALRASFEQEVAVW 139


>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar
           to SP|P05149 Aldose 1-epimerase precursor (EC 5.1.3.3)
           (Mutarotase) from Acinetobacter calcoaceticus; contains
           Pfam profile PF01263 Aldose 1-epimerase
          Length = 490

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 285 DKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDA-KTNKTDK 458
           D  EKE  GLY LK G  T +  T   AS  +    +      D +  +D+ KT KTDK
Sbjct: 153 DDNEKEKIGLYELKKGNLT-VKFTNWGASIISLHFPDKNGKMDDIVLGYDSVKTYKTDK 210


>At2g12875.1 68415.m01402 hypothetical protein
          Length = 325

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 324 KNGVATKILETGTDASATNDDTTE 395
           K GVATK+++ GT A+     +TE
Sbjct: 79  KRGVATKLIDKGTKATTEEPSSTE 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,192,658
Number of Sequences: 28952
Number of extensions: 179989
Number of successful extensions: 482
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)