Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I13
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...   186   2e-48
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    83   3e-17
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    26   2.6  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    25   5.9  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    25   5.9  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    25   5.9  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    25   7.8  

>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score =  186 bits (453), Expect = 2e-48
 Identities = 88/137 (64%), Positives = 109/137 (79%), Gaps = 4/137 (2%)
 Frame = +2

Query: 8   ARVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSF 187
           +R+E+M+KAK+QFK+R  ANNV+IIIPVP DADSP+F+T+ G V+Y PEQ A+ W+IK F
Sbjct: 289 SRIEFMVKAKAQFKKRCIANNVQIIIPVPEDADSPRFQTSNGHVQYAPEQAAMVWNIKKF 348

Query: 188 PGGKEYLMRAHFGLPSVVCE--EVDGKPPIQVKFEIPYFTTSGIQVRYLKIIE-KSGYQA 358
            GGKE+ MRA  GLPSV  E  +V  K P+Q+KF IPYFTTSGIQVRYLKI E K  Y A
Sbjct: 349 AGGKEFFMRAEMGLPSVKNEDIQVQKKRPVQLKFAIPYFTTSGIQVRYLKITEPKLNYHA 408

Query: 359 LPWVRYITQNG-DYQLR 406
           +PWVRY+TQNG +Y +R
Sbjct: 409 MPWVRYVTQNGTEYSIR 425


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 82.6 bits (195), Expect = 3e-17
 Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 2/134 (1%)
 Frame = +2

Query: 11  RVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFP 190
           ++ Y I  ++ +  +  ++++   IPVP +      +   G   Y P +N I W I  F 
Sbjct: 313 KIIYRISIRADYPHK-LSSSLNFRIPVPTNVVKANPRVNRGKAGYEPSENIINWKIPRFL 371

Query: 191 GGKEYLMRAHFGLPSVVCEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSG--YQALP 364
           G  E +  A   L +   +++  KPPI + F I  FT+SG+ V+YL++ E S   Y+++ 
Sbjct: 372 GETELIFYAEVELSNTTNQQIWAKPPISLDFNILMFTSSGLHVQYLRVSEPSNSKYKSIK 431

Query: 365 WVRYITQNGDYQLR 406
           WVRY T+ G  ++R
Sbjct: 432 WVRYSTRAGTCEIR 445


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -2

Query: 171 HVIAFCSGVYLTLPIVVLNFGE----SASAGTGIIISTLLAVERLLN 43
           H++  C  +Y  L IVV  FG     S   G G +    +A++R++N
Sbjct: 184 HLLVNCVAIYSFLSIVVYKFGVWKALSVYLGAG-VFGNYVALQRMMN 229


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = +2

Query: 59  TANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFPG--GKEYLMRAHFGLP 232
           T N ++     P     P F  T  ++ YTP  +   +S +S P    +  L   H  LP
Sbjct: 232 TLNVIDSYPTAPDQVALPPFPDTNSTLTYTPSNSQSIYSSQSQPSPYSRPLLSSVHPNLP 291


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 246 SQTTDGKPKWALIKYSLPPGNDLIDHVIAF 157
           S TTDG  +   I     PG   IDH+I F
Sbjct: 195 SHTTDGVYEGIAIGGDRYPGTTFIDHLIRF 224


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 285 SNFT*IGGFPSTSSQTTDGKPKWALIKYSLPPGNDLID 172
           SNF  +  F +   +     P WA + +S    N+L+D
Sbjct: 131 SNFIELSQFTAFEVELRVSHPNWAFVSWSHDDLNELVD 168


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 266 PIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDY 397
           P+ V     YF   G        + K+GY A    ++ T +GDY
Sbjct: 297 PLSVTDNANYFQWEGKGTSAQYYVNKAGYTAEQGCQWGTSSGDY 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,903
Number of Sequences: 5004
Number of extensions: 39941
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)