Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I13
(481 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 199 8e-52
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 191 2e-49
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 119 1e-27
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 50 1e-06
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 32 0.28
05_03_0443 + 14057080-14057201,14058566-14058698,14058758-140587... 31 0.64
08_02_0433 - 17114880-17114972,17115053-17115149,17115244-171153... 30 0.85
04_04_1223 + 31851545-31852609,31854314-31854773,31856201-318562... 30 0.85
01_06_1245 - 35693949-35694038,35694974-35695070,35695170-356952... 30 1.1
09_06_0038 - 20415363-20415883,20415917-20416596,20416858-204169... 28 3.4
03_06_0515 + 34457933-34458343,34458822-34459000,34459491-344598... 28 3.4
01_07_0202 + 41964448-41965104 28 3.4
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495 27 7.9
09_01_0178 - 2548611-2548670,2549816-2549918,2549993-2550096,255... 27 7.9
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 27 7.9
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653... 27 7.9
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 199 bits (486), Expect = 8e-52
Identities = 89/135 (65%), Positives = 110/135 (81%), Gaps = 2/135 (1%)
Frame = +2
Query: 8 ARVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSF 187
+R+E M+KA+SQFK RSTA NVEI +PVP+DA +P +T++GS Y PE++A+ W +KSF
Sbjct: 293 SRIELMVKARSQFKERSTATNVEIEVPVPSDATNPNIRTSMGSAAYAPERDAMVWKVKSF 352
Query: 188 PGGKEYLMRAHFGLPSVVCEEV--DGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQAL 361
PGGK+Y+ RA F LPS+ EE + K PI+VKFEIPYFT SGIQVRYLKIIEKSGYQAL
Sbjct: 353 PGGKDYMCRAEFSLPSITAEEAAPEKKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQAL 412
Query: 362 PWVRYITQNGDYQLR 406
PWVRYIT G+Y+LR
Sbjct: 413 PWVRYITMAGEYELR 427
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 191 bits (466), Expect = 2e-49
Identities = 86/135 (63%), Positives = 107/135 (79%), Gaps = 2/135 (1%)
Frame = +2
Query: 8 ARVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSF 187
+R++ +K +SQFK RSTA NVEI +PVP D+ +P +T++GS Y PE++A+ W IKSF
Sbjct: 268 SRIQITVKTRSQFKERSTATNVEIEVPVPEDSTNPNIRTSMGSAAYAPERDAMVWKIKSF 327
Query: 188 PGGKEYLMRAHFGLPSVVCEE--VDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQAL 361
PGGKEY+ RA F LPS+ E+ + K PI+VKFEIPYFT SGIQVRYLKIIEKSGYQAL
Sbjct: 328 PGGKEYMCRAEFSLPSITSEDGMPEKKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQAL 387
Query: 362 PWVRYITQNGDYQLR 406
PWVRYIT G+Y+LR
Sbjct: 388 PWVRYITMAGEYELR 402
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 119 bits (287), Expect = 1e-27
Identities = 56/133 (42%), Positives = 81/133 (60%), Gaps = 1/133 (0%)
Frame = +2
Query: 11 RVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFP 190
R+E +K KS F + A V + +PVP F+TT G KY +++ W I+ FP
Sbjct: 305 RMEINVKVKSVFGAKMFALGVVVKVPVPKQTAKTSFQTTSGKAKYNASIDSLVWKIRKFP 364
Query: 191 GGKEYLMRAHFGLPSVVCEEVD-GKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW 367
G E M A L S + E+ +PPIQ++F++P FT SG++VR+LK+ EKSGY + W
Sbjct: 365 GQTEATMSAEVELISTMGEKKSWNRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEW 424
Query: 368 VRYITQNGDYQLR 406
VRYIT+ G Y++R
Sbjct: 425 VRYITRAGSYEIR 437
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +2
Query: 266 PIQVKFEIPYFTTSGIQVRYLKIIEKS-GYQALPWVRYITQNGDYQLR 406
P+ + F IP + TS +QVRYL+I +KS Y WVRY+TQ Y R
Sbjct: 371 PVNMNFTIPMYNTSKLQVRYLQIAKKSKTYNPYRWVRYVTQANSYVAR 418
>05_03_0442 +
14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 31.9 bits (69), Expect = 0.28
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 65 NNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSI 178
+NV I IP+PA ++P + G KY + + WSI
Sbjct: 702 HNVVISIPLPALREAPSVRQIDGEWKYDSRNSVLEWSI 739
>05_03_0443 +
14057080-14057201,14058566-14058698,14058758-14058797,
14059175-14059398,14059904-14059976,14060364-14060614,
14060892-14061060,14061307-14061611,14062023-14062209,
14062311-14062464,14063186-14063248,14063337-14063433,
14063530-14063619
Length = 635
Score = 30.7 bits (66), Expect = 0.64
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 65 NNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSI 178
+NV I IP+PA ++P + G +Y + + WSI
Sbjct: 528 HNVVISIPLPALREAPSVRQIDGEWRYDSRNSVLEWSI 565
>08_02_0433 -
17114880-17114972,17115053-17115149,17115244-17115306,
17115765-17115918,17115992-17116178,17116567-17116871,
17117638-17117803,17118261-17118652,17119032-17119208,
17119565-17119604,17119762-17119809,17122393-17122428,
17122832-17123104
Length = 676
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 65 NNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSI 178
++V I IP+PA ++P+ + G KY + + WSI
Sbjct: 568 HSVIISIPLPALREAPRVRQIDGEWKYDSRNSVLEWSI 605
>04_04_1223 +
31851545-31852609,31854314-31854773,31856201-31856250,
31856333-31856463,31856569-31856665,31856759-31856950,
31857121-31857123
Length = 665
Score = 30.3 bits (65), Expect = 0.85
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 194 GKEYLMRAHFGLPSVVCEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALP 364
GKE L+RA + L S+V + P YFT + LK +EKS + P
Sbjct: 78 GKERLVRAKYSL-SLVARDGRASPLAGDTLRSHYFTPTSRSADVLKFVEKSNLSSSP 133
>01_06_1245 -
35693949-35694038,35694974-35695070,35695170-35695232,
35696079-35696232,35696303-35696489,35697001-35697314,
35698079-35698220,35698445-35698656,35699068-35699244,
35699589-35699628,35700056-35700155,35701731-35701804
Length = 549
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 65 NNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSI 178
+NV I IP+PA ++P + G +Y + + WSI
Sbjct: 442 HNVVISIPLPALREAPGVRQIDGEWRYDSRNSVLEWSI 479
>09_06_0038 -
20415363-20415883,20415917-20416596,20416858-20416911,
20417440-20417489,20417665-20417800,20419030-20419128,
20419411-20419676
Length = 601
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 231 GKPKWALIKYSLPPGNDLIDHVIAFC 154
G+ WA I+ PP +DL+ + IA C
Sbjct: 527 GRSTWAKIRLRAPPTDDLLLYAIAAC 552
>03_06_0515 +
34457933-34458343,34458822-34459000,34459491-34459812,
34459945-34460025
Length = 330
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 225 PKWALIKYSLPPGNDLIDHVIAFCSGVYLTLPIVVLN 115
P+W L++ S+ PG D +D + S Y L + N
Sbjct: 104 PQWWLVRVSMAPGTDYVDLLTKAISRRYPELSFKIYN 140
>01_07_0202 + 41964448-41965104
Length = 218
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 174 DHVIAFCSGVYLTLPIVVLNFGESASAG 91
DHV+ Y+ LPI V++ GE AG
Sbjct: 51 DHVVCAADSFYVGLPIPVVSAGEELMAG 78
>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
Length = 1086
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = -2
Query: 249 SSQTTDGKPKWALIKYSLPPGNDLIDHVIAFCSGVYLTLPIVVLNFGESASAGTGIIIST 70
S QTT K ++KY LP ++ AF +Y+ + + V + +S+ +I +
Sbjct: 730 SCQTTSSKRNGRMLKYLLPAITIVVG---AFAFSLYVVIRMKVKKHQKISSSMVDMISNR 786
Query: 69 LLAVERLL 46
LL+ + L+
Sbjct: 787 LLSYQELV 794
>09_01_0178 -
2548611-2548670,2549816-2549918,2549993-2550096,
2550893-2550988,2551418-2551482,2551558-2551591,
2552469-2552540,2552567-2552644,2553416-2553477,
2554267-2554530,2555057-2555246,2555432-2555500,
2555613-2555669,2555746-2555846,2556029-2556146,
2556225-2556272,2556362-2556487,2556960-2557118,
2558119-2558216,2558324-2558416,2559741-2559937,
2560231-2560354,2561121-2561334,2561773-2561830,
2561955-2562433
Length = 1022
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 143 YTPEQNAITWSIKSFPGGKEYLMRAHFGLPSVVCEEVDGKPPIQVKF 283
+ E+ + I+ P G+ Y A LP DGKPP+ V +
Sbjct: 9 FVHEEEEVDHPIRYLPLGRVYSSSAPCPLPKKPRSAEDGKPPVIVYY 55
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 231 GKPKWALIKYSLPPGNDLIDHVIAFC 154
G+ W+ I+ PP +DL+ + IA C
Sbjct: 508 GRSTWSKIRLHAPPTDDLLLYAIAAC 533
>05_04_0141 -
18364065-18364176,18364722-18364948,18365183-18365390,
18365497-18365706,18366078-18366180,18366214-18366325,
18367061-18367204,18367835-18367936,18368081-18368186,
18368301-18368335
Length = 452
Score = 27.1 bits (57), Expect = 7.9
Identities = 24/108 (22%), Positives = 45/108 (41%)
Frame = +2
Query: 11 RVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFP 190
RV M+ K+ + T +++ + +P S G+V +Q W+I P
Sbjct: 294 RVNVMVGIKNDPGK--TIDSITVQFRLPPLIASADLTANYGTVDILADQTCF-WTIGQIP 350
Query: 191 GGKEYLMRAHFGLPSVVCEEVDGKPPIQVKFEIPYFTTSGIQVRYLKI 334
K + + L + + P +VKF+I SG+Q+ L++
Sbjct: 351 KDKAPSLSGNLRLEEGLTH-LHTFPTFEVKFKIMGVALSGLQIDKLEV 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,870,848
Number of Sequences: 37544
Number of extensions: 237194
Number of successful extensions: 509
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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