Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I13
         (481 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   2e-09
SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)     43   1e-04
SB_44501| Best HMM Match : Adap_comp_sub (HMM E-Value=2.39622e-43)     31   0.49 
SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05)                      28   4.6  
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +2

Query: 134 SVKYTPEQNAITWSIKSFPGGKEYLMRAHFGLPSVVCEEVDGKPPIQVKFEIPYFTTSGI 313
           S +Y   +  + W +KS  GG E  +     L            P+ + FEIP +  SG+
Sbjct: 233 SAEYKTAEKLLLWQVKSIRGGAEVAINIKLKLKDKAKSARKELGPVSLDFEIPMYICSGL 292

Query: 314 QVRYLKIIEK-SGYQALPWVRYITQN 388
           Q+R LK+ EK   Y    WVRYIT +
Sbjct: 293 QIRSLKVYEKEKAYHPFRWVRYITHS 318


>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
          Length = 331

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
 Frame = +2

Query: 278 KFEIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYITQNGDYQLR 406
           K E+P F  SG++VRYLK+ E     S +  + WVRYI+++G Y+ R
Sbjct: 285 KIEVP-FACSGLKVRYLKVFEPKLNYSDHDTIKWVRYISRSGLYETR 330


>SB_44501| Best HMM Match : Adap_comp_sub (HMM E-Value=2.39622e-43)
          Length = 822

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
 Frame = +2

Query: 125 TIGSVKYTPEQNAITWSI-------KSFPGGKEYLMRAHFGLPSVVCEEVDGKPPIQVKF 283
           ++G+ KY PE +AI W I        + P      +     LP+ +    D +P  +V++
Sbjct: 706 SLGTAKYEPEYSAIVWRIDKLPLIQSNIPVDAPQTLTCLLELPAGLEVPDDYQPHAEVEY 765

Query: 284 EIPYFTTSGIQVRYLKIIEKS 346
           ++ Y   S   V  +K+  K+
Sbjct: 766 DVSYVLLSDTTVIAVKVSNKN 786


>SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05)
          Length = 681

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 167 TWSIKSFPGGKEYLMRAHFGLPSVVCEEVDGKPPIQV 277
           TW+I SFP GK   ++ HF   + V +   G  P+++
Sbjct: 100 TWTIPSFPSGKG--LQMHFSYQNPVVDVGAGMQPLRL 134


>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 65  NNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSI 178
           N+V I IPVP     P      G   Y  +Q+ + W +
Sbjct: 878 NDVVITIPVPHGVGGPVVGEIDGEYHYNHKQSTLGWQV 915


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,978,024
Number of Sequences: 59808
Number of extensions: 270525
Number of successful extensions: 546
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)