Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I13
(481 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 243 6e-65
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 241 2e-64
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 227 2e-60
Z83115-5|CAJ85757.1| 58|Caenorhabditis elegans Hypothetical pr... 109 1e-24
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 86 1e-17
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 86 1e-17
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 86 1e-17
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 46 1e-05
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 34 0.046
Z72514-5|CAA96679.5| 818|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z70271-1|CAB61041.1| 393|Caenorhabditis elegans Hypothetical pr... 27 7.0
AF103732-1|AAD03603.1| 393|Caenorhabditis elegans Wnt homolog p... 27 7.0
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 243 bits (594), Expect = 6e-65
Identities = 109/133 (81%), Positives = 125/133 (93%)
Frame = +2
Query: 8 ARVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSF 187
+RV ++IKAKSQFKRRSTANNVEIIIPVP+DADSPKFKT+IGSVKYTPEQ+A W+IK+F
Sbjct: 288 SRVSFIIKAKSQFKRRSTANNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTIKNF 347
Query: 188 PGGKEYLMRAHFGLPSVVCEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW 367
PGGKEYL+ AH LPSV+ EE +G+PPI+VKFEIPYFTTSGIQVRYLKIIEKSGYQALPW
Sbjct: 348 PGGKEYLLTAHLSLPSVMSEESEGRPPIKVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW 407
Query: 368 VRYITQNGDYQLR 406
VRYITQNG+Y++R
Sbjct: 408 VRYITQNGEYEMR 420
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 241 bits (589), Expect = 2e-64
Identities = 108/133 (81%), Positives = 124/133 (93%)
Frame = +2
Query: 8 ARVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSF 187
+RV ++IKAKSQFKRRSTANNVEIIIPVP+DADSPKFKT+IGSVKYTPEQ+A W+IK+F
Sbjct: 288 SRVSFIIKAKSQFKRRSTANNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTIKNF 347
Query: 188 PGGKEYLMRAHFGLPSVVCEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW 367
PGGKEYL+ AH LPSV+ EE +G+PPI+VKFEIPYFTTSGIQVRYLKIIEK GYQALPW
Sbjct: 348 PGGKEYLLTAHLSLPSVMSEESEGRPPIKVKFEIPYFTTSGIQVRYLKIIEKRGYQALPW 407
Query: 368 VRYITQNGDYQLR 406
VRYITQNG+Y++R
Sbjct: 408 VRYITQNGEYEMR 420
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 227 bits (556), Expect = 2e-60
Identities = 99/133 (74%), Positives = 119/133 (89%)
Frame = +2
Query: 8 ARVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSF 187
+RVEYM+KAKSQFKR+S AN+VE+IIPVP+D +PKFKT G+ KY PE NAI WSI+SF
Sbjct: 292 SRVEYMVKAKSQFKRQSVANHVEVIIPVPSDVSAPKFKTGAGTAKYVPELNAIVWSIRSF 351
Query: 188 PGGKEYLMRAHFGLPSVVCEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW 367
PGG+EY+MR+ F LPS+ EE++G+PPI VKFEIPY+TTSG+QVRYLKIIEKSGYQALPW
Sbjct: 352 PGGREYIMRSSFMLPSIGSEELEGRPPINVKFEIPYYTTSGLQVRYLKIIEKSGYQALPW 411
Query: 368 VRYITQNGDYQLR 406
VRY+TQNGDYQ+R
Sbjct: 412 VRYVTQNGDYQMR 424
>Z83115-5|CAJ85757.1| 58|Caenorhabditis elegans Hypothetical
protein K11D2.3b protein.
Length = 58
Score = 109 bits (261), Expect = 1e-24
Identities = 47/54 (87%), Positives = 53/54 (98%)
Frame = +2
Query: 245 EEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLR 406
EE +G+PPI+VKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNG+Y++R
Sbjct: 3 EESEGRPPIKVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGEYEMR 56
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 85.8 bits (203), Expect = 1e-17
Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Frame = +2
Query: 11 RVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFP 190
++E + KS FK A +E+ IP P + + G KY +NAI W IK
Sbjct: 304 KMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKRMA 363
Query: 191 GGKEYLMRAHFGLPSV--VCEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEK----SGY 352
G KE + A L S V ++ +PP+ + FE+P F SG++VRYLK+ E S +
Sbjct: 364 GMKESQISAEIDLLSTGNVEKKKWNRPPVSMNFEVP-FAPSGLKVRYLKVFEPKLNYSDH 422
Query: 353 QALPWVRYITQNGDYQLR 406
+ WVRYI ++G Y+ R
Sbjct: 423 DVIKWVRYIGRSGLYETR 440
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 85.8 bits (203), Expect = 1e-17
Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Frame = +2
Query: 11 RVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFP 190
++E + KS FK A +E+ IP P + + G KY +NAI W IK
Sbjct: 298 KMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKRMA 357
Query: 191 GGKEYLMRAHFGLPSV--VCEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEK----SGY 352
G KE + A L S V ++ +PP+ + FE+P F SG++VRYLK+ E S +
Sbjct: 358 GMKESQISAEIDLLSTGNVEKKKWNRPPVSMNFEVP-FAPSGLKVRYLKVFEPKLNYSDH 416
Query: 353 QALPWVRYITQNGDYQLR 406
+ WVRYI ++G Y+ R
Sbjct: 417 DVIKWVRYIGRSGLYETR 434
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 85.8 bits (203), Expect = 1e-17
Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Frame = +2
Query: 11 RVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFP 190
++E + KS FK A +E+ IP P + + G KY +NAI W IK
Sbjct: 304 KMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKRMA 363
Query: 191 GGKEYLMRAHFGLPSV--VCEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEK----SGY 352
G KE + A L S V ++ +PP+ + FE+P F SG++VRYLK+ E S +
Sbjct: 364 GMKESQISAEIDLLSTGNVEKKKWNRPPVSMNFEVP-FAPSGLKVRYLKVFEPKLNYSDH 422
Query: 353 QALPWVRYITQNGDYQLR 406
+ WVRYI ++G Y+ R
Sbjct: 423 DVIKWVRYIGRSGLYETR 440
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 46.4 bits (105), Expect = 1e-05
Identities = 28/114 (24%), Positives = 51/114 (44%)
Frame = +2
Query: 68 NVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFPGGKEYLMRAHFGLPSVVCE 247
+V + I +P + + G + + P + W+I GK ++ +
Sbjct: 305 DVVLEITMPKCVQNCNLVASHGRIAFDPTTKLLQWTIGKIEVGKPSTLKGSVAVSGTTVA 364
Query: 248 EVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLRT 409
E PPI +KF+I SG++V L + + Y+ V+YIT+ G + +RT
Sbjct: 365 E---NPPISLKFKINQLVLSGLKVNRLDMYGEK-YKPFKGVKYITKAGKFTIRT 414
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 34.3 bits (75), Expect = 0.046
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 59 TANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSI 178
T NNV II+P+P A +P G +Y +N I WS+
Sbjct: 408 TLNNVRIIVPLPT-ATAPSVGECDGEYEYHKTKNVIVWSL 446
>Z72514-5|CAA96679.5| 818|Caenorhabditis elegans Hypothetical
protein T10B10.7 protein.
Length = 818
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 296 FTTSGIQVRYLKIIEKSGYQAL-PWVRYITQNGDYQL 403
F +S + ++++ G L PW++Y +GDY +
Sbjct: 3 FNSSDVPSTLYSLVDEQGGGILSPWIKYARSSGDYSI 39
>Z70271-1|CAB61041.1| 393|Caenorhabditis elegans Hypothetical
protein W08D2.1 protein.
Length = 393
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Frame = +2
Query: 134 SVKYTPEQNAITWSIKSFPGGKEYLMRAHFGLP-----SVVCEEVDGKPPIQ 274
S Y+ +Q W +F G +YL R H+ +C +DG P Q
Sbjct: 23 SATYSTQQVPYNWLTLAFVGSNDYLPRPHYHSTDREHFKELCRRLDGLNPNQ 74
>AF103732-1|AAD03603.1| 393|Caenorhabditis elegans Wnt homolog
protein.
Length = 393
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Frame = +2
Query: 134 SVKYTPEQNAITWSIKSFPGGKEYLMRAHFGLP-----SVVCEEVDGKPPIQ 274
S Y+ +Q W +F G +YL R H+ +C +DG P Q
Sbjct: 23 SATYSTQQVPYNWLTLAFVGSNDYLPRPHYHSTDREHFKELCRRLDGLNPNQ 74
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,579,043
Number of Sequences: 27780
Number of extensions: 220584
Number of successful extensions: 515
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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