Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I13
(481 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 198 1e-51
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun... 169 8e-43
At5g46630.1 68418.m05741 clathrin adaptor complexes medium subun... 119 1e-27
At5g46630.2 68418.m05740 clathrin adaptor complexes medium subun... 87 8e-18
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun... 69 2e-12
At5g05010.1 68418.m00532 clathrin adaptor complexes medium subun... 33 0.13
At1g05680.1 68414.m00589 UDP-glucoronosyl/UDP-glucosyl transfera... 30 0.70
At1g05670.1 68414.m00588 UDP-glucoronosyl/UDP-glucosyl transfera... 30 0.70
At4g23882.1 68417.m03434 heavy-metal-associated domain-containin... 28 3.7
At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase, p... 27 5.0
At1g29170.1 68414.m03569 expressed protein ; expression supporte... 27 6.5
At5g38590.1 68418.m04667 F-box family protein contains F-box dom... 27 8.7
At2g24740.1 68415.m02955 SET domain-containing protein (SUVH8) i... 27 8.7
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 198 bits (484), Expect = 1e-51
Identities = 91/135 (67%), Positives = 109/135 (80%), Gaps = 2/135 (1%)
Frame = +2
Query: 8 ARVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSF 187
+RVE +IKA+SQFK RSTA NVEI +PVP DA +P +T++GS Y PE++A+ W IKSF
Sbjct: 292 SRVEMLIKARSQFKERSTATNVEIELPVPTDASNPTVRTSLGSASYAPEKDALVWKIKSF 351
Query: 188 PGGKEYLMRAHFGLPSVVCEEV--DGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQAL 361
PG KEY++RA F LPS+ EE + K PI+VKFEIPYFT SGIQVRYLKIIEKSGYQAL
Sbjct: 352 PGNKEYMLRAEFHLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQAL 411
Query: 362 PWVRYITQNGDYQLR 406
PWVRYIT G+Y+LR
Sbjct: 412 PWVRYITMAGEYELR 426
>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 169 bits (411), Expect = 8e-43
Identities = 80/135 (59%), Positives = 102/135 (75%), Gaps = 2/135 (1%)
Frame = +2
Query: 8 ARVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSF 187
+RVE ++KA+SQFK RS A +VEI +PVP DA +P +T++GS Y PE++A+ W I+ F
Sbjct: 292 SRVEMLVKARSQFKDRSYATSVEIELPVPTDAYNPDVRTSLGSAAYAPEKDALVWKIQYF 351
Query: 188 PGGKEYLMRAHFGLPSVVCEEV--DGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQAL 361
G KE+ ++A F LPS+ EE + K PI+VKFEIP F SGIQVRYLKIIEKSGYQA
Sbjct: 352 YGNKEHTLKADFHLPSIAAEEATPERKAPIRVKFEIPKFIVSGIQVRYLKIIEKSGYQAH 411
Query: 362 PWVRYITQNGDYQLR 406
PWVRYIT G+Y+LR
Sbjct: 412 PWVRYITMAGEYELR 426
>At5g46630.1 68418.m05741 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 438
Score = 119 bits (286), Expect = 1e-27
Identities = 56/133 (42%), Positives = 80/133 (60%), Gaps = 1/133 (0%)
Frame = +2
Query: 11 RVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFP 190
R+E +K KS F + A V + IPVP F+ T G KY P + + W I+ FP
Sbjct: 305 RMEVNVKVKSVFGAKMFALGVVVKIPVPKQTAKTNFQVTTGRAKYNPSIDCLVWKIRKFP 364
Query: 191 GGKEYLMRAHFGLPSVVCEEVDG-KPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW 367
G E + A L S + E+ +PPIQ++F++P FT SG++VR+LK+ EKSGY + W
Sbjct: 365 GQTESTLSAEIELISTMGEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEW 424
Query: 368 VRYITQNGDYQLR 406
VRYIT+ G Y++R
Sbjct: 425 VRYITKAGSYEIR 437
>At5g46630.2 68418.m05740 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 441
Score = 86.6 bits (205), Expect = 8e-18
Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Frame = +2
Query: 11 RVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFP 190
R+E +K KS F + A V + IPVP F+ T G KY P + + W I+ FP
Sbjct: 305 RMEVNVKVKSVFGAKMFALGVVVKIPVPKQTAKTNFQVTTGRAKYNPSIDCLVWKIRKFP 364
Query: 191 GGKEYLMRAHFGLPSVVCEEVD-GKPPIQVKFEIPYFTTSGIQVRYLKI 334
G E + A L S + E+ +PPIQ++F++P FT SG++VR+LK+
Sbjct: 365 GQTESTLSAEIELISTMGEKKSWTRPPIQMEFQVPMFTASGLRVRFLKV 413
>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 451
Score = 68.5 bits (160), Expect = 2e-12
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 6/138 (4%)
Frame = +2
Query: 11 RVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSV----KYTPEQNAITWSI 178
+ E +IK +++F AN + + +P+P F+ G+ + + W++
Sbjct: 313 KAEVIIKIRAEFPSDIIANTITVQMPLPNYTSRASFELEPGAAGQRTDFKESNKMLEWNL 372
Query: 179 KSFPGGKEYLMRAHFGLPSVVCEEVDGKP-PIQVKFEIPYFTTSGIQVRYLKIIEKSG-Y 352
K GG E+ +RA + + P+ + F IP + S +QV+YL+I +KS Y
Sbjct: 373 KKIVGGGEHTLRAKLTFSQEFHGNITKEAGPVSMTFTIPMYNVSKLQVKYLQIAKKSSSY 432
Query: 353 QALPWVRYITQNGDYQLR 406
WVRY+TQ Y R
Sbjct: 433 NPYRWVRYVTQANSYVAR 450
>At5g05010.1 68418.m00532 clathrin adaptor complexes medium
subunit-related contains pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 527
Score = 32.7 bits (71), Expect = 0.13
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 68 NVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSI 178
NV I +P+PA ++P + G +Y P + + WSI
Sbjct: 419 NVIISVPLPALREAPSVRQCDGEWRYDPRNSVLEWSI 455
>At1g05680.1 68414.m00589 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 453
Score = 30.3 bits (65), Expect = 0.70
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Frame = +2
Query: 26 IKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFPGGKEY 205
I SQF +R + +++ + + +D SP +KT S+ P N + +Y
Sbjct: 18 ITPMSQFCKRLASKGLKLTLVLVSDKPSPPYKTEHDSITVFPISNGFQEGEEPLQDLDDY 77
Query: 206 LMRAHFG----LPSVVCE-EVDGKPPIQVKFE 286
+ R LP +V + ++ G PP + ++
Sbjct: 78 MERVETSIKNTLPKLVEDMKLSGNPPRAIVYD 109
>At1g05670.1 68414.m00588 UDP-glucoronosyl/UDP-glucosyl transferase
family protein similar to UDP-glucose:salicylic acid
glucosyltransferase [Nicotiana tabacum] GI:7385017;
contains Pfam profiles PF00201: UDP-glucoronosyl and
UDP-glucosyl transferase, PF01535: PPR repeat
Length = 1184
Score = 30.3 bits (65), Expect = 0.70
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Frame = +2
Query: 26 IKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFPGGKEY 205
I SQF +R + +++I + + +D SP +KT ++ P N + EY
Sbjct: 18 ITPMSQFCKRLASKSLKITLVLVSDKPSPPYKTEHDTITVVPISNGFQEGQERSEDLDEY 77
Query: 206 LMRAHFG----LPSVVCE-EVDGKPP 268
+ R LP ++ + ++ G PP
Sbjct: 78 MERVESSIKNRLPKLIEDMKLSGNPP 103
>At4g23882.1 68417.m03434 heavy-metal-associated domain-containing
protein
Length = 284
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 342 RVGIKLCLG*DTSLKMEIIN*ELIKPLNYN 431
RVGIK C G T K +++N + + YN
Sbjct: 83 RVGIKCCKGCQTKAKRKLLNVSGVSTVEYN 112
>At2g40370.1 68415.m04978 laccase, putative / diphenol oxidase,
putative similar to laccase [Populus balsamifera subsp.
trichocarpa][GI:3805960]
Length = 580
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +2
Query: 140 KYTPEQNAITWSIKSFPGGKEYLMRAHFGLPSVVCEEVDGKPPIQVKF 283
++T N +++++ P L H G+P V + KPP++ +
Sbjct: 395 RFTASMNNVSFAL---PSNYSLLQAHHHGIPGVFTTDFPAKPPVKFDY 439
>At1g29170.1 68414.m03569 expressed protein ; expression supported
by MPSS
Length = 1016
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 255 STSSQTTDGKPKWALIKYSLPPGNDLIDHVIAFC 154
+TSS T +PK + SL PG+ I V++ C
Sbjct: 260 ATSSLKTGERPKGVFVSSSLTPGSCTIASVLSEC 293
>At5g38590.1 68418.m04667 F-box family protein contains F-box domain
Pfam:PF00646
Length = 289
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 176 IKSFPGGKEYLMRAHFGLPSVVCEEVDGKPPIQVKFEIPYFTTSGIQ 316
IK+ P +E + A LP V E + + + ++P+ +T+G Q
Sbjct: 240 IKNMPKLREAYVDAKCFLPKSVIESITSVKHLTICSKVPFLSTAGCQ 286
>At2g24740.1 68415.m02955 SET domain-containing protein (SUVH8)
identical to SUVH8 [Arabidopsis thaliana] GI:13517757;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain
Length = 755
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 53 RSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFPGGK 199
R+TA ++ ++ + D P + + S KY E + I S GGK
Sbjct: 334 RNTAGGIDSLLAKESGVDGPAATSVVTSGKYDNETEDLETLIYSGHGGK 382
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,857,879
Number of Sequences: 28952
Number of extensions: 201436
Number of successful extensions: 473
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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