Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I11
(438 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 68 6e-13
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 62 4e-11
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 52 4e-08
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 52 4e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 52 5e-08
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 50 2e-07
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 49 3e-07
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 49 3e-07
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 49 4e-07
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 49 4e-07
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 47 1e-06
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 46 3e-06
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 45 4e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 44 8e-06
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 44 1e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 44 1e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 42 3e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 41 1e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 40 2e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 38 9e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.008
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 33 0.019
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 28 0.72
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 28 0.72
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 27 1.7
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|... 27 1.7
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 25 3.9
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 25 5.1
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 25 6.7
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 24 8.9
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 68.1 bits (159), Expect = 6e-13
Identities = 30/68 (44%), Positives = 45/68 (66%)
Frame = +1
Query: 121 NHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFC 300
N F+E GV+ EL +A E++ + PT +Q EA+P++L DV+ A+T SGKT AF
Sbjct: 42 NEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFA 101
Query: 301 LPILQIVW 324
LP++Q +W
Sbjct: 102 LPVIQELW 109
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 62.1 bits (144), Expect = 4e-11
Identities = 32/86 (37%), Positives = 51/86 (59%)
Frame = +1
Query: 112 VTENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTG 291
+ E + F +F + P L +AI + ++ PT VQ+E +PL L G D++ A T SGKT
Sbjct: 7 IREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTA 66
Query: 292 AFCLPILQIVWETLKDMQEGKTRDGI 369
A+ +PIL+++ LK Q + + GI
Sbjct: 67 AYLIPILELL---LKQKQIDENQRGI 89
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 52.0 bits (119), Expect = 4e-08
Identities = 28/79 (35%), Positives = 46/79 (58%)
Frame = +1
Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309
+T++ + G+ + I + + PT +QA+A+P I G DV+ A+T SGKT AF LP
Sbjct: 417 VTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLP- 475
Query: 310 LQIVWETLKDMQEGKTRDG 366
++ +KD + KT +G
Sbjct: 476 ---MFRHIKDQRPLKTGEG 491
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 52.0 bits (119), Expect = 4e-08
Identities = 24/62 (38%), Positives = 41/62 (66%)
Frame = +1
Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQI 318
F + + + KAI+EM + T++Q ++P +L G DVL AA+T SGKT AF +P +++
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 319 VW 324
++
Sbjct: 151 LY 152
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 51.6 bits (118), Expect = 5e-08
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Frame = +1
Query: 70 YFHNRLL-SNLSNYLVTENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGG 246
Y ++LL SN N + F+ G+ L +AI + + PT +Q + +PL+L G
Sbjct: 47 YIASKLLESNRRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEG 106
Query: 247 GDVLMAAET*SGKTGAFCLPILQIVWETL 333
DV+ A T SGKT AF +P+++ + TL
Sbjct: 107 RDVVGMARTGSGKTAAFVIPMIEHLKSTL 135
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 50.0 bits (114), Expect = 2e-07
Identities = 23/63 (36%), Positives = 39/63 (61%)
Frame = +1
Query: 127 TMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLP 306
T ++F+ + + K + + + +PT +Q + +PL L G D++ AA T SGKT AF +P
Sbjct: 257 THSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVP 316
Query: 307 ILQ 315
IL+
Sbjct: 317 ILE 319
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 49.2 bits (112), Expect = 3e-07
Identities = 24/63 (38%), Positives = 38/63 (60%)
Frame = +1
Query: 133 TAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312
T FE++ + EL I E + P+ +Q E++P+ L G D+L A+ +GKT AF +P L
Sbjct: 44 TEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSL 103
Query: 313 QIV 321
+ V
Sbjct: 104 EKV 106
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 49.2 bits (112), Expect = 3e-07
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Frame = +1
Query: 85 LLSNLSNYLVTENH--TMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVL 258
++ L + ++ N+ + F++ + PEL + I + P+ +Q A+ ILG DVL
Sbjct: 1 MVDQLEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVL 60
Query: 259 MAAET*SGKTGAFCLPILQIVWETLKDMQE---GKTRDGIQQI 378
A++ +GKT F + +LQ + +LK Q TR+ QQI
Sbjct: 61 AQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQI 103
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 48.8 bits (111), Expect = 4e-07
Identities = 24/64 (37%), Positives = 37/64 (57%)
Frame = +1
Query: 124 HTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCL 303
HT +F + G+ P L ++ + PTD+Q + IL G + + A+T SGKT AF L
Sbjct: 4 HTRKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFAL 63
Query: 304 PILQ 315
PI++
Sbjct: 64 PIIE 67
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 48.8 bits (111), Expect = 4e-07
Identities = 21/58 (36%), Positives = 40/58 (68%)
Frame = +1
Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312
+EE G+ E+ K ++++++ P+ +Q A+P++L D++ AET SGKT AF +P++
Sbjct: 251 WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLI 308
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 47.2 bits (107), Expect = 1e-06
Identities = 21/61 (34%), Positives = 38/61 (62%)
Frame = +1
Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309
+T FEE G + K ++++ + PT +Q +A P+ + G D++ + T SGKT ++CLP
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 310 L 312
+
Sbjct: 181 I 181
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 45.6 bits (103), Expect = 3e-06
Identities = 24/89 (26%), Positives = 49/89 (55%)
Frame = +1
Query: 79 NRLLSNLSNYLVTENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVL 258
+ ++ N+ + + +++FEE + +L + I + P+ VQ+ A+ I G DV+
Sbjct: 3 DEIMENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVI 62
Query: 259 MAAET*SGKTGAFCLPILQIVWETLKDMQ 345
A++ +GKT F + ILQ + +++D Q
Sbjct: 63 AQAQSGTGKTATFSIGILQSIDLSVRDTQ 91
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 45.2 bits (102), Expect = 4e-06
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +1
Query: 133 TAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312
T F +F + PEL +AI + + P++VQ +P + G DVL A++ GKT F L L
Sbjct: 51 TGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTL 110
Query: 313 Q 315
Q
Sbjct: 111 Q 111
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 44.4 bits (100), Expect = 8e-06
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +1
Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315
F+E V +L + ++ ++ PT +QA P +L G DV+ AET SGKT AF +P LQ
Sbjct: 169 FDELDVSAKLREGLK--NYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQ 225
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 43.6 bits (98), Expect = 1e-05
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +1
Query: 202 PTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQIVWE 327
PT VQ ++P++ G D++ A+T SGKT F PIL + ++
Sbjct: 192 PTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFD 233
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 43.6 bits (98), Expect = 1e-05
Identities = 22/76 (28%), Positives = 42/76 (55%)
Frame = +1
Query: 88 LSNLSNYLVTENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAA 267
+ L++ + + T+ F E + A++ + T++Q + +P L G D+L AA
Sbjct: 24 IEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAA 83
Query: 268 ET*SGKTGAFCLPILQ 315
+T SGKT AF +P+++
Sbjct: 84 KTGSGKTLAFIVPLIE 99
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 42.3 bits (95), Expect = 3e-05
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Frame = +1
Query: 127 TMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGG--GDVLMAAET*SGKTGAFC 300
++ +FEE + PEL K I M + P+ +Q +A+PL+L +++ +++ +GKT AF
Sbjct: 112 SVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFA 171
Query: 301 LPILQIV 321
L +L V
Sbjct: 172 LTMLSRV 178
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 40.7 bits (91), Expect = 1e-04
Identities = 20/62 (32%), Positives = 38/62 (61%)
Frame = +1
Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309
++A+ F + PE+ ++ + ++ P +Q+ +P G D++ A+T SGKT AF +PI
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPI 180
Query: 310 LQ 315
L+
Sbjct: 181 LE 182
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 39.5 bits (88), Expect = 2e-04
Identities = 25/71 (35%), Positives = 36/71 (50%)
Frame = +1
Query: 136 AFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315
+F+ + L A+ + T VQA A+PL L D+++ A T SGKT A+ LP
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 316 IVWETLKDMQE 348
V T +D E
Sbjct: 62 KV--TRRDTDE 70
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 37.5 bits (83), Expect = 9e-04
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +1
Query: 112 VTENHTMTAFEEF--GVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGK 285
VT N+ + EEF G+L E +++ + T +Q A+P I D+L A T SGK
Sbjct: 40 VTGNNPVDPIEEFPEGILCE---NLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGK 96
Query: 286 TGAFCLPILQ 315
T A+ PILQ
Sbjct: 97 TIAYLFPILQ 106
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 34.3 bits (75), Expect = 0.008
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Frame = +1
Query: 97 LSNYLVTENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILG----------G 246
L+ + + +T F + +L + +++ + VQA +PL+L G
Sbjct: 114 LAEPITVDPNTTVEFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYG 173
Query: 247 GDVLMAAET*SGKTGAFCLPILQ 315
GDV ++A T SGKT ++ +PI+Q
Sbjct: 174 GDVCVSAATGSGKTLSYVIPIVQ 196
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 33.1 bits (72), Expect = 0.019
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 184 EMDWNLPTDVQAEAVPLILGGGD--VLMAAET*SGKTGAFCLPILQ 315
+M+ + PT +Q+ +P +L D + A+T SGKT A+ LPI+Q
Sbjct: 156 KMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQ 201
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 27.9 bits (59), Expect = 0.72
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 214 QAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQIVWE 327
QA+A+ + G V+++ T SGK+ + +PILQ + E
Sbjct: 316 QADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLE 353
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 27.9 bits (59), Expect = 0.72
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 52 VPTPLFYFHNRLLSNLSNYLVTENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVP 231
VP +FH+ +L N N L + + +FG ++ AI E N+P D E +P
Sbjct: 1681 VPAIKGFFHSSVL-NQKNSLQDILRLLNLWFKFGEHSDVAAAIVEGFSNVPMDTWLEVIP 1739
Query: 232 LIL 240
++
Sbjct: 1740 QLI 1742
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 26.6 bits (56), Expect = 1.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 393 CPLSGNLLYSVSCFPLLHIFQSLP 322
CPLS L+Y L ++FQS P
Sbjct: 164 CPLSKYLIYLFLSIHLFYVFQSFP 187
>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 1.7
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 393 CPLSGNLLYSVSCFPLLHIFQSLPNNLQYRQTESTRLTASCFGCHKNITST 241
C +S L + SCF L I P + + +RL CFGC K ST
Sbjct: 74 CIISVTLWFLWSCF-LKPILSIQPKLSFFIDSSLSRLLLLCFGCLKLSKST 123
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.4 bits (53), Expect = 3.9
Identities = 11/25 (44%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +1
Query: 340 MQEGKTRDGIQQISTEWTMS-FLDR 411
++EG+ + IQ++ TE+TMS FL++
Sbjct: 256 IEEGENKGQIQEVRTEFTMSMFLNQ 280
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 5.1
Identities = 17/68 (25%), Positives = 37/68 (54%)
Frame = -2
Query: 332 KVSQTICSIGKQKAPVLPLHVSAAIRTSPPPNIRGTASA*TSVGRFQSISSIALPSSGRT 153
++ + I +I KQ + + S +I +SP P+I+ + S +S+ R +++S + L T
Sbjct: 551 ELGENIPAISKQPSYLSISSSSKSINSSPSPSIQLSVS--SSISRDKNLSPLDLELDDPT 608
Query: 152 PNSSKAVI 129
+ + V+
Sbjct: 609 YSDEEEVL 616
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 24.6 bits (51), Expect = 6.7
Identities = 14/66 (21%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 244 GGDVLMAAET*SGKTGAFCLPILQIVWETLKDMQEGKTRDGIQQISTEWTMSF-LDRTTA 420
GG++ M ++ K G+FC ++++ ++ +++ K I++ + +S+ L + A
Sbjct: 795 GGNIDMVSQLLRKKCGSFCSADDVLIFKAVESLKKAKDTVDIEERQSLIELSYTLFKKAA 854
Query: 421 LAVTPD 438
TP+
Sbjct: 855 HVFTPE 860
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 24.2 bits (50), Expect = 8.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 277 SGKTGAFCLPILQIVWETLKDMQ 345
S +TGA CL IL+ W + M+
Sbjct: 82 SSQTGAICLDILKDQWSPVYTMK 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,792,245
Number of Sequences: 5004
Number of extensions: 35722
Number of successful extensions: 136
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -