Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I11
         (438 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       50   8e-09
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.039
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   0.84 

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 50.4 bits (115), Expect = 8e-09
 Identities = 25/69 (36%), Positives = 41/69 (59%)
 Frame = +1

Query: 136 AFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315
           +FE  G+   +   I++  +  PT VQ  A+P+I+ G D++  A+T SGKT AF +PI+ 
Sbjct: 197 SFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIIN 256

Query: 316 IVWETLKDM 342
            + E   D+
Sbjct: 257 TLLERSVDL 265


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 0.039
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -2

Query: 278 LHVSAAIRTSPPPNIRGTASA*TSVGRFQSISSIALPSSGRTPNSSKA 135
           L++S A+ + PPPN  G +   + V     +S++  P+ G+ P S+ A
Sbjct: 370 LNLSTALMSQPPPNF-GVSQV-SPVSMSALVSAVRSPAGGQLPPSAGA 415


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 356 VFPSCISFKVSQTICSIGKQKAPVLP 279
           +FP CI F     + SIG     +LP
Sbjct: 211 IFPFCIVFGSDMIVRSIGNSLMVILP 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,407
Number of Sequences: 438
Number of extensions: 2349
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)