BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_I11 (438 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 77 4e-15 At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 57 5e-09 At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 57 5e-09 At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 55 2e-08 At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 54 3e-08 At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 54 3e-08 At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 54 3e-08 At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 54 4e-08 At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 53 7e-08 At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 53 7e-08 At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 53 7e-08 At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 52 2e-07 At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 51 3e-07 At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 51 3e-07 At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 51 4e-07 At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 50 5e-07 At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 50 7e-07 At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 50 7e-07 At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 50 9e-07 At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 48 2e-06 At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 48 2e-06 At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 48 3e-06 At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 48 4e-06 At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 47 6e-06 At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 46 8e-06 At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 46 8e-06 At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 45 2e-05 At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 45 3e-05 At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 45 3e-05 At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 45 3e-05 At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 45 3e-05 At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 45 3e-05 At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 45 3e-05 At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 44 3e-05 At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 44 5e-05 At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 44 5e-05 At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 44 5e-05 At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 44 6e-05 At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 43 8e-05 At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 43 8e-05 At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 43 1e-04 At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 43 1e-04 At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 42 1e-04 At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 42 2e-04 At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 41 3e-04 At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 41 4e-04 At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 40 0.001 At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 39 0.001 At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 39 0.001 At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 38 0.002 At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 38 0.004 At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 38 0.004 At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 37 0.005 At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 36 0.012 At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 35 0.028 At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 34 0.036 At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 33 0.084 At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 33 0.11 At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 31 0.45 At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 29 1.4 At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 29 1.8 At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 28 2.4 At4g05303.1 68417.m00805 hypothetical protein 27 4.2 At1g30680.1 68414.m03751 toprim domain-containing protein contai... 27 4.2 At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro... 27 5.5 At2g07706.1 68415.m00956 expressed protein 27 5.5 At1g22200.1 68414.m02776 expressed protein 27 5.5 At3g42760.1 68416.m04465 hypothetical protein similar to At3g433... 27 7.3 At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 27 7.3 At1g10900.1 68414.m01252 phosphatidylinositol-4-phosphate 5-kina... 27 7.3 At1g76850.1 68414.m08943 expressed protein 26 9.7 >At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10) probable replication protein A1, Oryza sativa, EMBL:AF009179 Length = 456 Score = 77.4 bits (182), Expect = 4e-15 Identities = 39/81 (48%), Positives = 50/81 (61%) Frame = +1 Query: 118 ENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAF 297 EN + F E GV EL KA E + W P+ +QAEA+P L G DV+ A+T SGKTGAF Sbjct: 4 ENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAF 63 Query: 298 CLPILQIVWETLKDMQEGKTR 360 +PILQ + E + D + K R Sbjct: 64 AIPILQALLEYVYDSEPKKGR 84 >At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12) identical to cDNA DEAD box RNA helicase, RH12 GI:3776000 Length = 498 Score = 57.2 bits (132), Expect = 5e-09 Identities = 24/59 (40%), Positives = 40/59 (67%) Frame = +1 Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315 FE++ + +L K I E + P+ +Q E++P+ L G D+L A+ +GKTGAFC+P+L+ Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLE 184 >At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12) identical to cDNA DEAD box RNA helicase, RH12 GI:3776000 Length = 498 Score = 57.2 bits (132), Expect = 5e-09 Identities = 24/59 (40%), Positives = 40/59 (67%) Frame = +1 Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315 FE++ + +L K I E + P+ +Q E++P+ L G D+L A+ +GKTGAFC+P+L+ Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLE 184 >At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative Length = 528 Score = 55.2 bits (127), Expect = 2e-08 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 3/74 (4%) Frame = +1 Query: 103 NYLVTENHTMTA---FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET 273 N TE+ T T FE++ + +L + I E + P+ +Q E++P+ L G D+L A+ Sbjct: 141 NRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKN 200 Query: 274 *SGKTGAFCLPILQ 315 +GKTGAFC+P L+ Sbjct: 201 GTGKTGAFCIPTLE 214 >At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar to RNA helicase [Rattus norvegicus] GI:897915; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 760 Score = 54.4 bits (125), Expect = 3e-08 Identities = 28/80 (35%), Positives = 48/80 (60%) Frame = +1 Query: 73 FHNRLLSNLSNYLVTENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGD 252 + RL +S + V + + FE+ G ++ AI++ + PT +Q +A+P++L G D Sbjct: 210 YRQRLGIRVSGFDV--HRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRD 267 Query: 253 VLMAAET*SGKTGAFCLPIL 312 V+ A+T SGKT AF LP++ Sbjct: 268 VIGIAKTGSGKTAAFVLPMI 287 >At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar to RNA helicase GI:3776027 from [Arabidopsis thaliana] Length = 513 Score = 54.4 bits (125), Expect = 3e-08 Identities = 25/59 (42%), Positives = 38/59 (64%) Frame = +1 Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315 FE + P + AI++ + +PT +Q + +PLIL G DV+ A T SGKT AF +P+L+ Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLE 88 >At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein / pentatricopeptide (PPR) repeat-containing protein contains Pfam profiles: PF00271 helicase conserved C-terminal domain, PF01535 PPR repeat, PF00270: DEAD/DEAH box helicase Length = 1145 Score = 54.4 bits (125), Expect = 3e-08 Identities = 28/68 (41%), Positives = 44/68 (64%) Frame = +1 Query: 109 LVTENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKT 288 +V+ + +FEE G+ L ++E +++PTDVQ+ AVP I+ G D ++ + T SGKT Sbjct: 102 IVSPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKT 161 Query: 289 GAFCLPIL 312 A+ LPIL Sbjct: 162 LAYLLPIL 169 >At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28 {Saccharomyces cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 733 Score = 54.0 bits (124), Expect = 4e-08 Identities = 32/79 (40%), Positives = 44/79 (55%) Frame = +1 Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309 M ++EE + EL KA+E + P+ +Q A+PL L DV+ AET SGKT AF LP+ Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 371 Query: 310 LQIVWETLKDMQEGKTRDG 366 L + L M E +G Sbjct: 372 LAYI-SRLPPMSEENETEG 389 >At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar to ATP-dependent RNA helicases Length = 505 Score = 53.2 bits (122), Expect = 7e-08 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 3/70 (4%) Frame = +1 Query: 115 TENHTMTA---FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGK 285 TE+ T T FE++ + EL I E + P+ +Q E++P+ L G D+L A+ +GK Sbjct: 122 TEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181 Query: 286 TGAFCLPILQ 315 T AFC+P+L+ Sbjct: 182 TAAFCIPVLE 191 >At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar to ATP-dependent RNA helicases Length = 505 Score = 53.2 bits (122), Expect = 7e-08 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 3/70 (4%) Frame = +1 Query: 115 TENHTMTA---FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGK 285 TE+ T T FE++ + EL I E + P+ +Q E++P+ L G D+L A+ +GK Sbjct: 122 TEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181 Query: 286 TGAFCLPILQ 315 T AFC+P+L+ Sbjct: 182 TAAFCIPVLE 191 >At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar to gb|L13612 DEAD-box protein (dbp45A) from Drosophila melanogaster and is a member of PF|00270 DEAD/DEAH box helicase family Length = 491 Score = 53.2 bits (122), Expect = 7e-08 Identities = 29/66 (43%), Positives = 37/66 (56%) Frame = +1 Query: 115 TENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGA 294 ++ + T FE G+ + +E+ PT VQ VP IL G DVL A+T SGKT A Sbjct: 52 SDTTSATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAA 111 Query: 295 FCLPIL 312 F LPIL Sbjct: 112 FALPIL 117 >At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16) identical to cDNA DEAD box RNA helicase, RH16 GI:3776006 Length = 626 Score = 52.0 bits (119), Expect = 2e-07 Identities = 28/66 (42%), Positives = 39/66 (59%) Frame = +1 Query: 118 ENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAF 297 E +FEE G+ L +A+ + PT +Q A+P IL G DV+ A+T SGKT A+ Sbjct: 41 EEEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAY 100 Query: 298 CLPILQ 315 LP+LQ Sbjct: 101 LLPLLQ 106 >At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains Pfam profiles PF00270:DEAD/DEAH box helicase and PF00271: Helicase conserved C-terminal domain; identical to cDNA RH27 helicase, partial GI:4033334 Length = 633 Score = 51.2 bits (117), Expect = 3e-07 Identities = 26/66 (39%), Positives = 41/66 (62%) Frame = +1 Query: 127 TMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLP 306 T FE + K+I+EM + T +QA+A+P ++ G DVL AA T SGKT AF +P Sbjct: 152 TNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIP 211 Query: 307 ILQIVW 324 +++++ Sbjct: 212 AVELLY 217 >At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong similarity to RNA helicase RH25 [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH31 GI:3776030 Length = 522 Score = 51.2 bits (117), Expect = 3e-07 Identities = 27/65 (41%), Positives = 40/65 (61%) Frame = +1 Query: 127 TMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLP 306 T T F+ + + P KAI++ + T VQ +P+IL G DVL A+T +GKT AF LP Sbjct: 52 TKTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLP 111 Query: 307 ILQIV 321 +++V Sbjct: 112 SIEVV 116 >At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA helicase -Mus musculus,PIR2:I84741 Length = 621 Score = 50.8 bits (116), Expect = 4e-07 Identities = 22/63 (34%), Positives = 42/63 (66%) Frame = +1 Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQI 318 F+E G+ E+ A++E++ +PT++Q +P ++ V++ + T SGKT A+ LPI+Q+ Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQL 173 Query: 319 VWE 327 + E Sbjct: 174 MRE 176 >At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to RNA helicase [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 563 Score = 50.4 bits (115), Expect = 5e-07 Identities = 27/63 (42%), Positives = 38/63 (60%) Frame = +1 Query: 133 TAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312 T F++F + P K IE+ + T VQ +PLIL G D+L A+T +GKT AF LP + Sbjct: 80 TRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSI 139 Query: 313 QIV 321 + V Sbjct: 140 EAV 142 >At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong similarity to RNA helicase RH26 [Arabidopsis thaliana] GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH26 GI:3776024 Length = 850 Score = 50.0 bits (114), Expect = 7e-07 Identities = 27/63 (42%), Positives = 39/63 (61%) Frame = +1 Query: 133 TAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312 T F++F + P KAI++ + T VQ +P+IL G DVL A+T +GKT AF LP + Sbjct: 382 TRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAI 441 Query: 313 QIV 321 + V Sbjct: 442 EAV 444 >At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo sapiens] GI:3523150; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 633 Score = 50.0 bits (114), Expect = 7e-07 Identities = 24/61 (39%), Positives = 34/61 (55%) Frame = +1 Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309 + F E + L I + PT VQ A+P++L G D++ A+T SGKT AFC PI Sbjct: 158 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPI 217 Query: 310 L 312 + Sbjct: 218 I 218 >At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo sapiens] GI:3523150; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 646 Score = 49.6 bits (113), Expect = 9e-07 Identities = 23/61 (37%), Positives = 34/61 (55%) Frame = +1 Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309 + F E + L I+ + PT VQ A+P++ G D++ A+T SGKT AFC PI Sbjct: 145 VNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPI 204 Query: 310 L 312 + Sbjct: 205 I 205 >At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28) identical to cDNA DEAD box RNA helicase, RH28 GI:3776026 Length = 789 Score = 48.4 bits (110), Expect = 2e-06 Identities = 25/59 (42%), Positives = 34/59 (57%) Frame = +1 Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315 F E + L +A E + + PT +QA +PL L G D+ +A T SGKT AF LP L+ Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227 >At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22) similar to RNA helicase GI:3776015 from [Arabidopsis thaliana]; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00270: DEAD/DEAH box helicase; matches EST OAO811-2 Length = 581 Score = 48.4 bits (110), Expect = 2e-06 Identities = 25/75 (33%), Positives = 44/75 (58%) Frame = +1 Query: 121 NHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFC 300 +HT++ ++ G+ + A+ + ++ P+ QA +P IL G DV++AAET SGKT + Sbjct: 77 DHTVS-WKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYL 135 Query: 301 LPILQIVWETLKDMQ 345 PI+ + T D + Sbjct: 136 APIIDQLTNTALDSE 150 >At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17) identical to GB:CAA09207, contains a DEAD/DEAH box family ATP-dependent helicas signature; identical to cDNA DEAD box RNA helicase, RH17 GI:3776008 Length = 609 Score = 48.0 bits (109), Expect = 3e-06 Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%) Frame = +1 Query: 136 AFEEFGVLPELGKAIEE-MDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312 +F G+ +L ++E M + PT VQA+A+P+IL G DVL+ A T +GKT A+ P++ Sbjct: 30 SFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLI 89 >At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 505 Score = 47.6 bits (108), Expect = 4e-06 Identities = 22/58 (37%), Positives = 36/58 (62%) Frame = +1 Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312 F G+ P+L +E ++ PT +Q +A+P L G +L +A+T SGKT +F +PI+ Sbjct: 112 FTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPII 169 >At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-consensus acceptor splice site AT at exon 2; similar to DEAD box helicase protein GB:NP_006764 from [Homo sapiens], contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 568 Score = 46.8 bits (106), Expect = 6e-06 Identities = 24/67 (35%), Positives = 40/67 (59%) Frame = +1 Query: 127 TMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLP 306 T F+ + + AI+EM + T +QA ++ +L G DVL AA T SGKT AF +P Sbjct: 87 TNVTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIP 146 Query: 307 ILQIVWE 327 ++++++ Sbjct: 147 AVELLFK 153 >At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) similar to RNA helicase DBY protein [Mus musculus] GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH11 GI:3775998 Length = 612 Score = 46.4 bits (105), Expect = 8e-06 Identities = 22/61 (36%), Positives = 33/61 (54%) Frame = +1 Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309 + F + + L I + PT VQ A+P++L D++ A+T SGKT AFC PI Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209 Query: 310 L 312 + Sbjct: 210 I 210 >At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) similar to RNA helicase DBY protein [Mus musculus] GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH11 GI:3775998 Length = 612 Score = 46.4 bits (105), Expect = 8e-06 Identities = 22/61 (36%), Positives = 33/61 (54%) Frame = +1 Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309 + F + + L I + PT VQ A+P++L D++ A+T SGKT AFC PI Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209 Query: 310 L 312 + Sbjct: 210 I 210 >At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar to RNA helicase GB:A57514 GI:897915 from [Rattus norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 989 Score = 45.2 bits (102), Expect = 2e-05 Identities = 19/59 (32%), Positives = 39/59 (66%) Frame = +1 Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315 + + G+ ++ ++++++ P +QA+A+P+I+ G D + A+T SGKT F LP+L+ Sbjct: 398 WHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLR 456 >At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative Length = 427 Score = 44.8 bits (101), Expect = 3e-05 Identities = 23/61 (37%), Positives = 36/61 (59%) Frame = +1 Query: 133 TAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312 + F +F + PEL +AI + + P++VQ E +P + G DV+ A++ GKT F L L Sbjct: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105 Query: 313 Q 315 Q Sbjct: 106 Q 106 >At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15) DEAD BOX RNA helicase RH15, Arabidopsis thaliana, EMBL:ATH010466 Length = 427 Score = 44.8 bits (101), Expect = 3e-05 Identities = 23/61 (37%), Positives = 36/61 (59%) Frame = +1 Query: 133 TAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312 + F +F + PEL +AI + + P++VQ E +P + G DV+ A++ GKT F L L Sbjct: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105 Query: 313 Q 315 Q Sbjct: 106 Q 106 >At3g19760.1 68416.m02501 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative contains DEAD/DEAH helicase domain; similar to RNA helicase GB:CAA09195 from [Arabidopsis thaliana]; identical to cDNA DEAD box RNA helicase, RH2 GI:3775984 Length = 408 Score = 44.8 bits (101), Expect = 3e-05 Identities = 21/72 (29%), Positives = 42/72 (58%) Frame = +1 Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309 +T+F + G+ ++ + + E + P+ +Q AV IL G DV+ A++ +GKT L + Sbjct: 34 ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSV 93 Query: 310 LQIVWETLKDMQ 345 Q+V + +++Q Sbjct: 94 CQVVDTSSREVQ 105 >At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 619 Score = 44.8 bits (101), Expect = 3e-05 Identities = 23/76 (30%), Positives = 41/76 (53%) Frame = +1 Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309 + +FE G PEL + + ++ PT +QA++ P+ + G D++ A+T SGKT + +P Sbjct: 157 LMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPG 216 Query: 310 LQIVWETLKDMQEGKT 357 + D + G T Sbjct: 217 FLHLQRIRNDSRMGPT 232 >At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 619 Score = 44.8 bits (101), Expect = 3e-05 Identities = 23/76 (30%), Positives = 41/76 (53%) Frame = +1 Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309 + +FE G PEL + + ++ PT +QA++ P+ + G D++ A+T SGKT + +P Sbjct: 157 LMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPG 216 Query: 310 LQIVWETLKDMQEGKT 357 + D + G T Sbjct: 217 FLHLQRIRNDSRMGPT 232 >At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 618 Score = 44.8 bits (101), Expect = 3e-05 Identities = 23/76 (30%), Positives = 41/76 (53%) Frame = +1 Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309 + +FE G PEL + + ++ PT +QA++ P+ + G D++ A+T SGKT + +P Sbjct: 157 LMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPG 216 Query: 310 LQIVWETLKDMQEGKT 357 + D + G T Sbjct: 217 FLHLQRIRNDSRMGPT 232 >At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo sapiens, SWISSPROT:IF42_HUMAN Length = 472 Score = 44.4 bits (100), Expect = 3e-05 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%) Frame = +1 Query: 91 SNLSNYLVTENHTMTAFEEF--GVLPE-LGKAIEEMDWNLPTDVQAEAVPLILGGGDVLM 261 S + + VTE + G +PE + +EE+ + PTD+Q EA+P + G D ++ Sbjct: 59 SEIESNSVTETTVPLTLRQICQGFVPEHILHRMEEIGFVFPTDIQREALPTLFTGRDCIL 118 Query: 262 AAET*SGKTGAFCLPILQIV 321 A+T SGKT + L I ++ Sbjct: 119 HAQTGSGKTLTYLLLIFSLI 138 >At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase, putative (RH30) strong similarity to ethylene-responsive RNA helicase [Lycopersicon esculentum] GI:5669638; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 591 Score = 44.0 bits (99), Expect = 5e-05 Identities = 23/61 (37%), Positives = 36/61 (59%) Frame = +1 Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309 M F++ + +AI ++ + PT +QA+ P+ L G D++ AET SGKT A+ LP Sbjct: 164 MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 223 Query: 310 L 312 L Sbjct: 224 L 224 >At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase, putative (RH30) strong similarity to ethylene-responsive RNA helicase [Lycopersicon esculentum] GI:5669638; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 484 Score = 44.0 bits (99), Expect = 5e-05 Identities = 23/61 (37%), Positives = 36/61 (59%) Frame = +1 Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309 M F++ + +AI ++ + PT +QA+ P+ L G D++ AET SGKT A+ LP Sbjct: 164 MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 223 Query: 310 L 312 L Sbjct: 224 L 224 >At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative Length = 739 Score = 44.0 bits (99), Expect = 5e-05 Identities = 23/59 (38%), Positives = 36/59 (61%) Frame = +1 Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315 F + + + + +++ + TDVQ+ A+P L G D+L AA T SGKT AF +PIL+ Sbjct: 73 FAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILE 131 >At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00397: WW domain Length = 1088 Score = 43.6 bits (98), Expect = 6e-05 Identities = 22/73 (30%), Positives = 38/73 (52%) Frame = +1 Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQI 318 FE G+ PE+ + + + PT +QA+ P+ L D++ A+T SGKT + +P + Sbjct: 437 FESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFIL 496 Query: 319 VWETLKDMQEGKT 357 + D + G T Sbjct: 497 LRHCRNDSRNGPT 509 >At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 781 Score = 43.2 bits (97), Expect = 8e-05 Identities = 19/59 (32%), Positives = 37/59 (62%) Frame = +1 Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315 F E G ++ KA++E +++ P +QA A ++ G ++A ++ SGKT A+ +P++Q Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQ 434 >At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to RNA helicase [Rattus norvegicus] GI:897915; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 1166 Score = 43.2 bits (97), Expect = 8e-05 Identities = 18/59 (30%), Positives = 38/59 (64%) Frame = +1 Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315 + + G+ ++ ++++++ P +Q +A+P+I+ G D + A+T SGKT F LP+L+ Sbjct: 531 WHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLR 589 >At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar to ATP-dependent RNA helicase GB:6321111 from (S. cerevisiae) Length = 558 Score = 42.7 bits (96), Expect = 1e-04 Identities = 20/50 (40%), Positives = 32/50 (64%) Frame = +1 Query: 172 KAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQIV 321 +A++ + + T VQAE +P + DV++ A T SGKT AF LP ++I+ Sbjct: 29 EALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEII 78 >At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 465 Score = 42.7 bits (96), Expect = 1e-04 Identities = 20/50 (40%), Positives = 32/50 (64%) Frame = +1 Query: 172 KAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQIV 321 +A++ + + T VQAE +P + DV++ A T SGKT AF LP ++I+ Sbjct: 30 EALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEII 79 >At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13) similar to RNA helicase GB:CAA09204 from [Arabidopsis thaliana]; identical to cDNA DEAD box RNA helicase, RH13 GI:3776002 Length = 832 Score = 42.3 bits (95), Expect = 1e-04 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Frame = +1 Query: 133 TAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLIL-GGGDVLMAAET*SGKTGAFCLPI 309 +A+ + P L K+I +D+ PT +Q + G DV+ AAET SGKT AF LPI Sbjct: 190 SAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPI 249 Query: 310 LQ 315 LQ Sbjct: 250 LQ 251 >At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) Length = 593 Score = 41.5 bits (93), Expect = 2e-04 Identities = 20/50 (40%), Positives = 32/50 (64%) Frame = +1 Query: 172 KAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQIV 321 +A+ + D+ T VQA +PL+ DV + A T SGKT AF +P+++I+ Sbjct: 29 EALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL 78 >At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar to RNA helicase involved in rRNA processing GB:6321267 from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH box domain Length = 541 Score = 41.1 bits (92), Expect = 3e-04 Identities = 18/45 (40%), Positives = 28/45 (62%) Frame = +1 Query: 178 IEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312 + E+ + PT +Q +A+P++L G + A T SGKT AF P+L Sbjct: 156 LAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPML 200 >At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00397: WW domain Length = 713 Score = 40.7 bits (91), Expect = 4e-04 Identities = 20/73 (27%), Positives = 38/73 (52%) Frame = +1 Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQI 318 F + VLP G+ + ++ P+ +QA++ P+ + D++ A+T SGKT + +P Sbjct: 231 FNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMH 290 Query: 319 VWETLKDMQEGKT 357 + D + G T Sbjct: 291 LQRIHNDSRMGPT 303 >At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative Length = 591 Score = 39.5 bits (88), Expect = 0.001 Identities = 18/39 (46%), Positives = 26/39 (66%) Frame = +1 Query: 202 PTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQI 318 PT +Q + +P+IL G D++ A T SGKT F LP++ I Sbjct: 169 PTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMI 207 >At1g54270.1 68414.m06187 eukaryotic translation initiation factor 4A-2 / eIF-4A-2 similar to eukaryotic translation initiation factor 4A GI:19696 from [Nicotiana plumbaginifolia] Length = 412 Score = 39.1 bits (87), Expect = 0.001 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 3/103 (2%) Frame = +1 Query: 79 NRLLSNLSNYLVTENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVL 258 N +L + + + +F+ G+ L + I + P+ +Q + G DV+ Sbjct: 21 NEVLDGQDEFFTSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVI 80 Query: 259 MAAET*SGKTGAFCLPILQIVWETLKDMQE---GKTRDGIQQI 378 A++ +GKT FC +LQ + L Q TR+ QQI Sbjct: 81 QQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQI 123 >At1g51380.1 68414.m05780 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative Length = 392 Score = 39.1 bits (87), Expect = 0.001 Identities = 17/62 (27%), Positives = 37/62 (59%) Frame = +1 Query: 136 AFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315 +F++ G+ ++ + + + + P+++Q A+ IL G DV+ A++ +GKT + + Q Sbjct: 23 SFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQ 82 Query: 316 IV 321 IV Sbjct: 83 IV 84 >At3g13920.1 68416.m01758 eukaryotic translation initiation factor 4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain Length = 412 Score = 38.3 bits (85), Expect = 0.002 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 3/103 (2%) Frame = +1 Query: 79 NRLLSNLSNYLVTENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVL 258 N +L + + + +F+ G+ L + I + P+ +Q + G DV+ Sbjct: 21 NEVLEGQDEFFTSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVI 80 Query: 259 MAAET*SGKTGAFCLPILQIVWETLKDMQE---GKTRDGIQQI 378 A++ +GKT FC +LQ + +L Q TR+ QQI Sbjct: 81 QQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQI 123 >At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA helicase DBP2 - Saccharomyces cerevisiae, PID:g5272 Length = 542 Score = 37.5 bits (83), Expect = 0.004 Identities = 16/37 (43%), Positives = 25/37 (67%) Frame = +1 Query: 202 PTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312 PT +Q + +P++L G D++ A T SGKT F LP++ Sbjct: 120 PTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMI 156 >At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA helicase, Mus musculus, PIR:I49731 Length = 496 Score = 37.5 bits (83), Expect = 0.004 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 3/72 (4%) Frame = +1 Query: 139 FEEFGVLPELGKAIE-EMDWNLPTDVQAEAVPLIL--GGGDVLMAAET*SGKTGAFCLPI 309 FE+ + PEL K + EM + P+ +QA ++P+I+ ++ A SGKT F L + Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGM 152 Query: 310 LQIVWETLKDMQ 345 L V TL++ Q Sbjct: 153 LSRVDPTLREPQ 164 >At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) similar to ethylene-responsive RNA helicase GI:5669638 from [Lycopersicon esculentum]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 501 Score = 37.1 bits (82), Expect = 0.005 Identities = 17/59 (28%), Positives = 35/59 (59%) Frame = +1 Query: 136 AFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312 +F + G + + +++ + PT +Q++ P+ + G D++ AET SGKT ++ LP + Sbjct: 100 SFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAI 158 >At1g72730.1 68414.m08410 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative similar to Eukaryotic initiation factor 4A-10 GB:P41382 [Nicotiana tabacum]; identical to (putative) RNA helicase GB:CAA09211 [Arabidopsis thaliana] (Nucleic Acids Res. 27 (2), 628-636 (1999)) Length = 414 Score = 35.9 bits (79), Expect = 0.012 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Frame = +1 Query: 136 AFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315 +F+ + P+L + I + P+ +Q + G DV+ A++ +GKT FC +LQ Sbjct: 42 SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQ 101 Query: 316 IVWETLKDMQE---GKTRDGIQQI 378 + +L Q TR+ QQI Sbjct: 102 QLDISLVQCQALVLAPTRELAQQI 125 >At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to RNA helicases GI:3775995, GI:3775987 from [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 616 Score = 34.7 bits (76), Expect = 0.028 Identities = 19/59 (32%), Positives = 30/59 (50%) Frame = +1 Query: 136 AFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312 A E G+ PE+ KA+ +Q + + G D++ A T +GKT AF +PI+ Sbjct: 105 AISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 163 >At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly identical to RNA helicase [Arabidopsis thaliana] GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 671 Score = 34.3 bits (75), Expect = 0.036 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = +1 Query: 211 VQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315 +QA ++L G D++ A T GKT AF LPIL+ Sbjct: 122 IQASTFDMVLDGADLVGRARTGQGKTLAFVLPILE 156 >At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 368 Score = 33.1 bits (72), Expect = 0.084 Identities = 14/31 (45%), Positives = 22/31 (70%) Frame = +1 Query: 220 EAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312 +A+P L G +L +A+T SGKT +F +PI+ Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPII 32 >At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) similar to RNA helicases GI:3775995, GI:3775987 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 610 Score = 32.7 bits (71), Expect = 0.11 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = +1 Query: 136 AFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312 A + G+ PE+ KA++ +Q + + G D++ A T +GKT AF +PI+ Sbjct: 117 AIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175 >At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar to D-E-A-D box protein [Drosophila melanogaster] GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 512 Score = 30.7 bits (66), Expect = 0.45 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%) Frame = +1 Query: 160 PELGKAIEEMDWNLPTDVQAEAVPLILGGG----DVLMAAET*SGKTGAFCLPILQIV 321 P+L KA+E M + VQ +G G D+ + + T SGKT ++ LPI+Q++ Sbjct: 30 PKLKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLL 87 >At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly identical to RNA helicase [Arabidopsis thaliana] GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00098: Zinc knuckle Length = 747 Score = 29.1 bits (62), Expect = 1.4 Identities = 19/80 (23%), Positives = 39/80 (48%) Frame = +1 Query: 100 SNYLVTENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*S 279 +N + ++ A + + L +++E+ +Q + L G D++ A+T + Sbjct: 91 NNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGT 150 Query: 280 GKTGAFCLPILQIVWETLKD 339 GKT AF +PI++ + E D Sbjct: 151 GKTLAFGIPIIKRLTEEAGD 170 >At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several putative ATP-dependent helicases Length = 1058 Score = 28.7 bits (61), Expect = 1.8 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = +1 Query: 175 AIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315 A++ + N QAEA+ L G +V +A T SGK+ + +P+ + Sbjct: 385 ALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVPVFE 431 >At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative similar to SP|O94761 ATP-dependent DNA helicase Q4 (RecQ4) {Homo sapiens}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 911 Score = 28.3 bits (60), Expect = 2.4 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +1 Query: 208 DVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQIVWETL 333 D Q +A+ +ILGG ++ T +GK+ + +P + + TL Sbjct: 272 DGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITL 313 >At4g05303.1 68417.m00805 hypothetical protein Length = 235 Score = 27.5 bits (58), Expect = 4.2 Identities = 10/38 (26%), Positives = 19/38 (50%) Frame = +1 Query: 322 WETLKDMQEGKTRDGIQQISTEWTMSFLDRTTALAVTP 435 W+T+ K+ D ++ E+ + F+DRT + P Sbjct: 71 WKTITSFLVRKSTDSVRATKHEYDILFMDRTVVVQAPP 108 >At1g30680.1 68414.m03751 toprim domain-containing protein contains Pfam profile: PF01751 toprim domain Length = 709 Score = 27.5 bits (58), Expect = 4.2 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = -2 Query: 383 VEICCIPSLV-FPSCISFKVSQTICSIGKQKAPVL 282 +E C +PS +PS S+ S+ + S+ ++ PVL Sbjct: 29 LEFCLLPSFASYPSSPSYSSSRQVSSVSRRFRPVL 63 >At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family protein low similarity to ubiquitin-conjugating BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831, ubiquitin-conjugating enzyme [Mus musculus] GI:3319990; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme Length = 1102 Score = 27.1 bits (57), Expect = 5.5 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = +1 Query: 235 ILGGGDVLMAAET*SGKTGAFCLPILQIVWET-LKDMQEGKTRDGIQQISTEWTM 396 I G D + AE SG+ GA LP+ I + T L + R + S+++T+ Sbjct: 700 IEGNSDADIYAENDSGRNGALALPLAAIEFVTRLASGIFSRARKSVDSSSSDYTV 754 >At2g07706.1 68415.m00956 expressed protein Length = 306 Score = 27.1 bits (57), Expect = 5.5 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -3 Query: 202 VGSSPSPRLLYLARGERRTLRKQSLCDF 119 V SSPSPRL L G+R LR+ + F Sbjct: 224 VPSSPSPRLRLLETGDRVFLRRLAASPF 251 >At1g22200.1 68414.m02776 expressed protein Length = 386 Score = 27.1 bits (57), Expect = 5.5 Identities = 13/44 (29%), Positives = 21/44 (47%) Frame = +1 Query: 67 FYFHNRLLSNLSNYLVTENHTMTAFEEFGVLPELGKAIEEMDWN 198 F FH+ LL NY ++ AF +F P + ++ + WN Sbjct: 231 FQFHDMLLFQQGNYNISHKVNRLAFGDF--FPGVVNPLDGVQWN 272 >At3g42760.1 68416.m04465 hypothetical protein similar to At3g43370, At2g14780, At1g34710, At1g27810, At1g25784, At4g08890 Length = 237 Score = 26.6 bits (56), Expect = 7.3 Identities = 10/38 (26%), Positives = 18/38 (47%) Frame = +1 Query: 322 WETLKDMQEGKTRDGIQQISTEWTMSFLDRTTALAVTP 435 W+T+ K D ++ E+ + F+DRT + P Sbjct: 73 WKTITSFLVRKATDSVRATKHEYGILFMDRTVVVEAPP 110 >At1g79350.1 68414.m09247 DNA-binding protein, putative contains Pfam PF00628: PHD-finger domain; contains TIGRFAMS TIGR01053: zinc finger domain, LSD1 subclass; contains Pfam PF00271: Helicase conserved C-terminal domain; similar to WSSV086 (GI:19481678)[shrimp white spot syndrome virus]; similar to nuclear protein Np95 (GI:17939938) [Mus musculus] Length = 1299 Score = 26.6 bits (56), Expect = 7.3 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +1 Query: 316 IVWETLKDMQEGKTRDGI 369 + WE+ M EGK RDG+ Sbjct: 1114 VTWESASSMLEGKRRDGL 1131 >At1g10900.1 68414.m01252 phosphatidylinositol-4-phosphate 5-kinase family protein similar to phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains Pfam profiles PF01504: Phosphatidylinositol-4-phosphate 5-Kinase, PF02493: MORN repeat Length = 754 Score = 26.6 bits (56), Expect = 7.3 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -2 Query: 296 KAPVLPLHVSAAIRTSPPPNIRGTASA*TSVGRFQSISSIALPSSGR 156 K +L H ++ T+P P+IRG+ SVG Q + I LP + R Sbjct: 618 KGLLLVTHEPNSVNTAPGPHIRGSTLRAFSVGE-QEVDLI-LPGTAR 662 >At1g76850.1 68414.m08943 expressed protein Length = 1090 Score = 26.2 bits (55), Expect = 9.7 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = -1 Query: 366 SVSCFPLLHIFQSLPNNLQYRQTESTRLTASCFGCHKNITST 241 SVS LL + + N L ++ E TR+ +CF + ST Sbjct: 1010 SVSADDLLALTKQCSNELLQQELERTRVNTACFAESAPLEST 1051 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,482,771 Number of Sequences: 28952 Number of extensions: 194220 Number of successful extensions: 591 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 578 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 591 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 692941200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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