SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I11
         (438 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)...    77   4e-15
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)...    57   5e-09
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)...    57   5e-09
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative              55   2e-08
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila...    54   3e-08
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila...    54   3e-08
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /...    54   3e-08
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar...    54   4e-08
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila...    53   7e-08
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila...    53   7e-08
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila...    53   7e-08
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)...    52   2e-07
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai...    51   3e-07
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ...    51   3e-07
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he...    51   4e-07
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ...    50   5e-07
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim...    50   7e-07
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar...    50   7e-07
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    50   9e-07
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)...    48   2e-06
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)...    48   2e-06
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)...    48   3e-06
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c...    48   4e-06
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co...    47   6e-06
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ...    46   8e-06
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ...    46   8e-06
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila...    45   2e-05
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative              45   3e-05
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)...    45   3e-05
At3g19760.1 68416.m02501 eukaryotic translation initiation facto...    45   3e-05
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ...    45   3e-05
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ...    45   3e-05
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ...    45   3e-05
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY...    44   3e-05
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica...    44   5e-05
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica...    44   5e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative              44   5e-05
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar...    44   6e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai...    43   8e-05
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar...    43   8e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila...    43   1e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai...    43   1e-04
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)...    42   1e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)       42   2e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila...    41   3e-04
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar...    41   4e-04
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative           40   0.001
At1g54270.1 68414.m06187 eukaryotic translation initiation facto...    39   0.001
At1g51380.1 68414.m05780 eukaryotic translation initiation facto...    39   0.001
At3g13920.1 68416.m01758 eukaryotic translation initiation facto...    38   0.002
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA...    38   0.004
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he...    38   0.004
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ...    37   0.005
At1g72730.1 68414.m08410 eukaryotic translation initiation facto...    36   0.012
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar...    35   0.028
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id...    34   0.036
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c...    33   0.084
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s...    33   0.11 
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila...    31   0.45 
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden...    29   1.4  
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa...    29   1.8  
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si...    28   2.4  
At4g05303.1 68417.m00805 hypothetical protein                          27   4.2  
At1g30680.1 68414.m03751 toprim domain-containing protein contai...    27   4.2  
At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro...    27   5.5  
At2g07706.1 68415.m00956 expressed protein                             27   5.5  
At1g22200.1 68414.m02776 expressed protein                             27   5.5  
At3g42760.1 68416.m04465 hypothetical protein similar to At3g433...    27   7.3  
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ...    27   7.3  
At1g10900.1 68414.m01252 phosphatidylinositol-4-phosphate 5-kina...    27   7.3  
At1g76850.1 68414.m08943 expressed protein                             26   9.7  

>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
           probable replication protein A1, Oryza sativa,
           EMBL:AF009179
          Length = 456

 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 39/81 (48%), Positives = 50/81 (61%)
 Frame = +1

Query: 118 ENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAF 297
           EN  +  F E GV  EL KA E + W  P+ +QAEA+P  L G DV+  A+T SGKTGAF
Sbjct: 4   ENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAF 63

Query: 298 CLPILQIVWETLKDMQEGKTR 360
            +PILQ + E + D +  K R
Sbjct: 64  AIPILQALLEYVYDSEPKKGR 84


>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
           identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
          Length = 498

 Score = 57.2 bits (132), Expect = 5e-09
 Identities = 24/59 (40%), Positives = 40/59 (67%)
 Frame = +1

Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315
           FE++ +  +L K I E  +  P+ +Q E++P+ L G D+L  A+  +GKTGAFC+P+L+
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLE 184


>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
           identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
          Length = 498

 Score = 57.2 bits (132), Expect = 5e-09
 Identities = 24/59 (40%), Positives = 40/59 (67%)
 Frame = +1

Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315
           FE++ +  +L K I E  +  P+ +Q E++P+ L G D+L  A+  +GKTGAFC+P+L+
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLE 184


>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
          Length = 528

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
 Frame = +1

Query: 103 NYLVTENHTMTA---FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET 273
           N   TE+ T T    FE++ +  +L + I E  +  P+ +Q E++P+ L G D+L  A+ 
Sbjct: 141 NRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKN 200

Query: 274 *SGKTGAFCLPILQ 315
            +GKTGAFC+P L+
Sbjct: 201 GTGKTGAFCIPTLE 214


>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
           to RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 760

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 28/80 (35%), Positives = 48/80 (60%)
 Frame = +1

Query: 73  FHNRLLSNLSNYLVTENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGD 252
           +  RL   +S + V  +  +  FE+ G   ++  AI++  +  PT +Q +A+P++L G D
Sbjct: 210 YRQRLGIRVSGFDV--HRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRD 267

Query: 253 VLMAAET*SGKTGAFCLPIL 312
           V+  A+T SGKT AF LP++
Sbjct: 268 VIGIAKTGSGKTAAFVLPMI 287


>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
           to RNA helicase GI:3776027 from [Arabidopsis thaliana]
          Length = 513

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 25/59 (42%), Positives = 38/59 (64%)
 Frame = +1

Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315
           FE   + P +  AI++  + +PT +Q + +PLIL G DV+  A T SGKT AF +P+L+
Sbjct: 30  FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLE 88


>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles:  PF00271 helicase conserved
           C-terminal domain, PF01535 PPR repeat, PF00270:
           DEAD/DEAH box helicase
          Length = 1145

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 28/68 (41%), Positives = 44/68 (64%)
 Frame = +1

Query: 109 LVTENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKT 288
           +V+   +  +FEE G+   L  ++E   +++PTDVQ+ AVP I+ G D ++ + T SGKT
Sbjct: 102 IVSPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKT 161

Query: 289 GAFCLPIL 312
            A+ LPIL
Sbjct: 162 LAYLLPIL 169


>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
           SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
          Length = 733

 Score = 54.0 bits (124), Expect = 4e-08
 Identities = 32/79 (40%), Positives = 44/79 (55%)
 Frame = +1

Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309
           M ++EE  +  EL KA+E   +  P+ +Q  A+PL L   DV+  AET SGKT AF LP+
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 371

Query: 310 LQIVWETLKDMQEGKTRDG 366
           L  +   L  M E    +G
Sbjct: 372 LAYI-SRLPPMSEENETEG 389


>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 53.2 bits (122), Expect = 7e-08
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
 Frame = +1

Query: 115 TENHTMTA---FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGK 285
           TE+ T T    FE++ +  EL   I E  +  P+ +Q E++P+ L G D+L  A+  +GK
Sbjct: 122 TEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181

Query: 286 TGAFCLPILQ 315
           T AFC+P+L+
Sbjct: 182 TAAFCIPVLE 191


>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 53.2 bits (122), Expect = 7e-08
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
 Frame = +1

Query: 115 TENHTMTA---FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGK 285
           TE+ T T    FE++ +  EL   I E  +  P+ +Q E++P+ L G D+L  A+  +GK
Sbjct: 122 TEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181

Query: 286 TGAFCLPILQ 315
           T AFC+P+L+
Sbjct: 182 TAAFCIPVLE 191


>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
           to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
           melanogaster and is a member of PF|00270 DEAD/DEAH box
           helicase family
          Length = 491

 Score = 53.2 bits (122), Expect = 7e-08
 Identities = 29/66 (43%), Positives = 37/66 (56%)
 Frame = +1

Query: 115 TENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGA 294
           ++  + T FE  G+     +  +E+    PT VQ   VP IL G DVL  A+T SGKT A
Sbjct: 52  SDTTSATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAA 111

Query: 295 FCLPIL 312
           F LPIL
Sbjct: 112 FALPIL 117


>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
           identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
          Length = 626

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 28/66 (42%), Positives = 39/66 (59%)
 Frame = +1

Query: 118 ENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAF 297
           E     +FEE G+   L +A+ +     PT +Q  A+P IL G DV+  A+T SGKT A+
Sbjct: 41  EEEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAY 100

Query: 298 CLPILQ 315
            LP+LQ
Sbjct: 101 LLPLLQ 106


>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
           Pfam profiles  PF00270:DEAD/DEAH box helicase and
           PF00271:  Helicase conserved C-terminal domain;
           identical to cDNA RH27 helicase, partial GI:4033334
          Length = 633

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 26/66 (39%), Positives = 41/66 (62%)
 Frame = +1

Query: 127 TMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLP 306
           T   FE   +     K+I+EM +   T +QA+A+P ++ G DVL AA T SGKT AF +P
Sbjct: 152 TNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIP 211

Query: 307 ILQIVW 324
            +++++
Sbjct: 212 AVELLY 217


>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
           similarity to RNA helicase RH25 [Arabidopsis thaliana]
           GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH31
           GI:3776030
          Length = 522

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 27/65 (41%), Positives = 40/65 (61%)
 Frame = +1

Query: 127 TMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLP 306
           T T F+ + + P   KAI++  +   T VQ   +P+IL G DVL  A+T +GKT AF LP
Sbjct: 52  TKTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLP 111

Query: 307 ILQIV 321
            +++V
Sbjct: 112 SIEVV 116


>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
           helicase -Mus musculus,PIR2:I84741
          Length = 621

 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 22/63 (34%), Positives = 42/63 (66%)
 Frame = +1

Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQI 318
           F+E G+  E+  A++E++  +PT++Q   +P ++    V++ + T SGKT A+ LPI+Q+
Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQL 173

Query: 319 VWE 327
           + E
Sbjct: 174 MRE 176


>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
           RNA helicase [Arabidopsis thaliana] GI:3776023; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 563

 Score = 50.4 bits (115), Expect = 5e-07
 Identities = 27/63 (42%), Positives = 38/63 (60%)
 Frame = +1

Query: 133 TAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312
           T F++F + P   K IE+  +   T VQ   +PLIL G D+L  A+T +GKT AF LP +
Sbjct: 80  TRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSI 139

Query: 313 QIV 321
           + V
Sbjct: 140 EAV 142


>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
           similarity to RNA helicase RH26 [Arabidopsis thaliana]
           GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH26
           GI:3776024
          Length = 850

 Score = 50.0 bits (114), Expect = 7e-07
 Identities = 27/63 (42%), Positives = 39/63 (61%)
 Frame = +1

Query: 133 TAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312
           T F++F + P   KAI++  +   T VQ   +P+IL G DVL  A+T +GKT AF LP +
Sbjct: 382 TRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAI 441

Query: 313 QIV 321
           + V
Sbjct: 442 EAV 444


>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 633

 Score = 50.0 bits (114), Expect = 7e-07
 Identities = 24/61 (39%), Positives = 34/61 (55%)
 Frame = +1

Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309
           +  F E  +   L   I    +  PT VQ  A+P++L G D++  A+T SGKT AFC PI
Sbjct: 158 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPI 217

Query: 310 L 312
           +
Sbjct: 218 I 218


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 49.6 bits (113), Expect = 9e-07
 Identities = 23/61 (37%), Positives = 34/61 (55%)
 Frame = +1

Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309
           +  F E  +   L   I+   +  PT VQ  A+P++  G D++  A+T SGKT AFC PI
Sbjct: 145 VNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPI 204

Query: 310 L 312
           +
Sbjct: 205 I 205


>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
           identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
          Length = 789

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 25/59 (42%), Positives = 34/59 (57%)
 Frame = +1

Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315
           F E  +   L +A E + +  PT +QA  +PL L G D+  +A T SGKT AF LP L+
Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227


>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
           similar to RNA helicase GI:3776015 from [Arabidopsis
           thaliana]; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00270: DEAD/DEAH box
           helicase; matches EST OAO811-2
          Length = 581

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 25/75 (33%), Positives = 44/75 (58%)
 Frame = +1

Query: 121 NHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFC 300
           +HT++ ++  G+   +  A+ +  ++ P+  QA  +P IL G DV++AAET SGKT  + 
Sbjct: 77  DHTVS-WKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYL 135

Query: 301 LPILQIVWETLKDMQ 345
            PI+  +  T  D +
Sbjct: 136 APIIDQLTNTALDSE 150


>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
           identical to GB:CAA09207, contains a DEAD/DEAH box
           family ATP-dependent helicas signature; identical to
           cDNA DEAD box RNA helicase, RH17 GI:3776008
          Length = 609

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
 Frame = +1

Query: 136 AFEEFGVLPELGKAIEE-MDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312
           +F   G+  +L   ++E M +  PT VQA+A+P+IL G DVL+ A T +GKT A+  P++
Sbjct: 30  SFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLI 89


>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
           contains Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 505

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 22/58 (37%), Positives = 36/58 (62%)
 Frame = +1

Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312
           F   G+ P+L   +E   ++ PT +Q +A+P  L G  +L +A+T SGKT +F +PI+
Sbjct: 112 FTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPII 169


>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
           non-consensus acceptor splice site AT at exon 2; similar
           to DEAD box helicase protein GB:NP_006764 from [Homo
           sapiens], contains Pfam profile: PF00270  DEAD/DEAH box
           helicase
          Length = 568

 Score = 46.8 bits (106), Expect = 6e-06
 Identities = 24/67 (35%), Positives = 40/67 (59%)
 Frame = +1

Query: 127 TMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLP 306
           T   F+   +  +   AI+EM +   T +QA ++  +L G DVL AA T SGKT AF +P
Sbjct: 87  TNVTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIP 146

Query: 307 ILQIVWE 327
            ++++++
Sbjct: 147 AVELLFK 153


>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 46.4 bits (105), Expect = 8e-06
 Identities = 22/61 (36%), Positives = 33/61 (54%)
 Frame = +1

Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309
           +  F +  +   L   I    +  PT VQ  A+P++L   D++  A+T SGKT AFC PI
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209

Query: 310 L 312
           +
Sbjct: 210 I 210


>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 46.4 bits (105), Expect = 8e-06
 Identities = 22/61 (36%), Positives = 33/61 (54%)
 Frame = +1

Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309
           +  F +  +   L   I    +  PT VQ  A+P++L   D++  A+T SGKT AFC PI
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209

Query: 310 L 312
           +
Sbjct: 210 I 210


>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
           to RNA helicase GB:A57514 GI:897915 from [Rattus
           norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 989

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 19/59 (32%), Positives = 39/59 (66%)
 Frame = +1

Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315
           + + G+  ++   ++++++  P  +QA+A+P+I+ G D +  A+T SGKT  F LP+L+
Sbjct: 398 WHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLR 456


>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
          Length = 427

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 23/61 (37%), Positives = 36/61 (59%)
 Frame = +1

Query: 133 TAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312
           + F +F + PEL +AI +  +  P++VQ E +P  + G DV+  A++  GKT  F L  L
Sbjct: 46  SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105

Query: 313 Q 315
           Q
Sbjct: 106 Q 106


>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
           DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
           EMBL:ATH010466
          Length = 427

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 23/61 (37%), Positives = 36/61 (59%)
 Frame = +1

Query: 133 TAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312
           + F +F + PEL +AI +  +  P++VQ E +P  + G DV+  A++  GKT  F L  L
Sbjct: 46  SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105

Query: 313 Q 315
           Q
Sbjct: 106 Q 106


>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative / DEAD box RNA helicase,
           putative contains DEAD/DEAH helicase domain; similar to
           RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
           identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
          Length = 408

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 21/72 (29%), Positives = 42/72 (58%)
 Frame = +1

Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309
           +T+F + G+  ++ + + E  +  P+ +Q  AV  IL G DV+  A++ +GKT    L +
Sbjct: 34  ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSV 93

Query: 310 LQIVWETLKDMQ 345
            Q+V  + +++Q
Sbjct: 94  CQVVDTSSREVQ 105


>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 619

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 23/76 (30%), Positives = 41/76 (53%)
 Frame = +1

Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309
           + +FE  G  PEL + +    ++ PT +QA++ P+ + G D++  A+T SGKT  + +P 
Sbjct: 157 LMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPG 216

Query: 310 LQIVWETLKDMQEGKT 357
              +     D + G T
Sbjct: 217 FLHLQRIRNDSRMGPT 232


>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 619

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 23/76 (30%), Positives = 41/76 (53%)
 Frame = +1

Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309
           + +FE  G  PEL + +    ++ PT +QA++ P+ + G D++  A+T SGKT  + +P 
Sbjct: 157 LMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPG 216

Query: 310 LQIVWETLKDMQEGKT 357
              +     D + G T
Sbjct: 217 FLHLQRIRNDSRMGPT 232


>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 618

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 23/76 (30%), Positives = 41/76 (53%)
 Frame = +1

Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309
           + +FE  G  PEL + +    ++ PT +QA++ P+ + G D++  A+T SGKT  + +P 
Sbjct: 157 LMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPG 216

Query: 310 LQIVWETLKDMQEGKT 357
              +     D + G T
Sbjct: 217 FLHLQRIRNDSRMGPT 232


>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
           EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
           sapiens, SWISSPROT:IF42_HUMAN
          Length = 472

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
 Frame = +1

Query: 91  SNLSNYLVTENHTMTAFEEF--GVLPE-LGKAIEEMDWNLPTDVQAEAVPLILGGGDVLM 261
           S + +  VTE        +   G +PE +   +EE+ +  PTD+Q EA+P +  G D ++
Sbjct: 59  SEIESNSVTETTVPLTLRQICQGFVPEHILHRMEEIGFVFPTDIQREALPTLFTGRDCIL 118

Query: 262 AAET*SGKTGAFCLPILQIV 321
            A+T SGKT  + L I  ++
Sbjct: 119 HAQTGSGKTLTYLLLIFSLI 138


>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 591

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 23/61 (37%), Positives = 36/61 (59%)
 Frame = +1

Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309
           M  F++      + +AI ++ +  PT +QA+  P+ L G D++  AET SGKT A+ LP 
Sbjct: 164 MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 223

Query: 310 L 312
           L
Sbjct: 224 L 224


>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 484

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 23/61 (37%), Positives = 36/61 (59%)
 Frame = +1

Query: 130 MTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPI 309
           M  F++      + +AI ++ +  PT +QA+  P+ L G D++  AET SGKT A+ LP 
Sbjct: 164 MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 223

Query: 310 L 312
           L
Sbjct: 224 L 224


>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 
          Length = 739

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 23/59 (38%), Positives = 36/59 (61%)
 Frame = +1

Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315
           F +  +  +  + +++  +   TDVQ+ A+P  L G D+L AA T SGKT AF +PIL+
Sbjct: 73  FAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILE 131


>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 1088

 Score = 43.6 bits (98), Expect = 6e-05
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +1

Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQI 318
           FE  G+ PE+ + +    +  PT +QA+  P+ L   D++  A+T SGKT  + +P   +
Sbjct: 437 FESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFIL 496

Query: 319 VWETLKDMQEGKT 357
           +     D + G T
Sbjct: 497 LRHCRNDSRNGPT 509


>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
           Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 781

 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 19/59 (32%), Positives = 37/59 (62%)
 Frame = +1

Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315
           F E G   ++ KA++E +++ P  +QA A   ++ G   ++A ++ SGKT A+ +P++Q
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQ 434


>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
           RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 1166

 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 18/59 (30%), Positives = 38/59 (64%)
 Frame = +1

Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315
           + + G+  ++   ++++++  P  +Q +A+P+I+ G D +  A+T SGKT  F LP+L+
Sbjct: 531 WHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLR 589


>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicase GB:6321111 from (S.
           cerevisiae)
          Length = 558

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 20/50 (40%), Positives = 32/50 (64%)
 Frame = +1

Query: 172 KAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQIV 321
           +A++   + + T VQAE +P +    DV++ A T SGKT AF LP ++I+
Sbjct: 29  EALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEII 78


>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
           Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 465

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 20/50 (40%), Positives = 32/50 (64%)
 Frame = +1

Query: 172 KAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQIV 321
           +A++   + + T VQAE +P +    DV++ A T SGKT AF LP ++I+
Sbjct: 30  EALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEII 79


>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
           similar to RNA helicase GB:CAA09204 from [Arabidopsis
           thaliana]; identical to cDNA DEAD box RNA helicase, RH13
           GI:3776002
          Length = 832

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +1

Query: 133 TAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLIL-GGGDVLMAAET*SGKTGAFCLPI 309
           +A+    + P L K+I  +D+  PT +Q     +    G DV+ AAET SGKT AF LPI
Sbjct: 190 SAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPI 249

Query: 310 LQ 315
           LQ
Sbjct: 250 LQ 251


>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 
          Length = 593

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 20/50 (40%), Positives = 32/50 (64%)
 Frame = +1

Query: 172 KAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQIV 321
           +A+ + D+   T VQA  +PL+    DV + A T SGKT AF +P+++I+
Sbjct: 29  EALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL 78


>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
           to RNA helicase involved in rRNA processing GB:6321267
           from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
           box domain
          Length = 541

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 18/45 (40%), Positives = 28/45 (62%)
 Frame = +1

Query: 178 IEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312
           + E+ +  PT +Q +A+P++L G +    A T SGKT AF  P+L
Sbjct: 156 LAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPML 200


>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 713

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 20/73 (27%), Positives = 38/73 (52%)
 Frame = +1

Query: 139 FEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQI 318
           F  + VLP  G+ +    ++ P+ +QA++ P+ +   D++  A+T SGKT  + +P    
Sbjct: 231 FNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMH 290

Query: 319 VWETLKDMQEGKT 357
           +     D + G T
Sbjct: 291 LQRIHNDSRMGPT 303


>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 
          Length = 591

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +1

Query: 202 PTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQI 318
           PT +Q + +P+IL G D++  A T SGKT  F LP++ I
Sbjct: 169 PTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMI 207


>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
           4A-2 / eIF-4A-2 similar to eukaryotic translation
           initiation factor 4A GI:19696 from [Nicotiana
           plumbaginifolia]
          Length = 412

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
 Frame = +1

Query: 79  NRLLSNLSNYLVTENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVL 258
           N +L     +  + +    +F+  G+   L + I    +  P+ +Q   +     G DV+
Sbjct: 21  NEVLDGQDEFFTSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVI 80

Query: 259 MAAET*SGKTGAFCLPILQIVWETLKDMQE---GKTRDGIQQI 378
             A++ +GKT  FC  +LQ +   L   Q      TR+  QQI
Sbjct: 81  QQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQI 123


>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative
          Length = 392

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 17/62 (27%), Positives = 37/62 (59%)
 Frame = +1

Query: 136 AFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315
           +F++ G+  ++ + + +  +  P+++Q  A+  IL G DV+  A++ +GKT    + + Q
Sbjct: 23  SFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQ 82

Query: 316 IV 321
           IV
Sbjct: 83  IV 84


>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
           4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
           contains Pfam profile PF00270: DEAD/DEAH box helicase;
           contains Pfam profile PF00271: Helicase conserved
           C-terminal domain
          Length = 412

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
 Frame = +1

Query: 79  NRLLSNLSNYLVTENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVL 258
           N +L     +  + +    +F+  G+   L + I    +  P+ +Q   +     G DV+
Sbjct: 21  NEVLEGQDEFFTSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVI 80

Query: 259 MAAET*SGKTGAFCLPILQIVWETLKDMQE---GKTRDGIQQI 378
             A++ +GKT  FC  +LQ +  +L   Q      TR+  QQI
Sbjct: 81  QQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQI 123


>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
           helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
          Length = 542

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 16/37 (43%), Positives = 25/37 (67%)
 Frame = +1

Query: 202 PTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312
           PT +Q + +P++L G D++  A T SGKT  F LP++
Sbjct: 120 PTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMI 156


>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
           helicase, Mus musculus, PIR:I49731
          Length = 496

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
 Frame = +1

Query: 139 FEEFGVLPELGKAIE-EMDWNLPTDVQAEAVPLIL--GGGDVLMAAET*SGKTGAFCLPI 309
           FE+  + PEL K +  EM +  P+ +QA ++P+I+      ++  A   SGKT  F L +
Sbjct: 93  FEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGM 152

Query: 310 LQIVWETLKDMQ 345
           L  V  TL++ Q
Sbjct: 153 LSRVDPTLREPQ 164


>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
           similar to ethylene-responsive RNA helicase GI:5669638
           from [Lycopersicon esculentum]; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
          Length = 501

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 17/59 (28%), Positives = 35/59 (59%)
 Frame = +1

Query: 136 AFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312
           +F + G    + + +++  +  PT +Q++  P+ + G D++  AET SGKT ++ LP +
Sbjct: 100 SFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAI 158


>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative similar to Eukaryotic
           initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
           identical to (putative) RNA helicase GB:CAA09211
           [Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
           628-636 (1999))
          Length = 414

 Score = 35.9 bits (79), Expect = 0.012
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
 Frame = +1

Query: 136 AFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315
           +F+   + P+L + I    +  P+ +Q   +     G DV+  A++ +GKT  FC  +LQ
Sbjct: 42  SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQ 101

Query: 316 IVWETLKDMQE---GKTRDGIQQI 378
            +  +L   Q      TR+  QQI
Sbjct: 102 QLDISLVQCQALVLAPTRELAQQI 125


>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
           RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 616

 Score = 34.7 bits (76), Expect = 0.028
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +1

Query: 136 AFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312
           A  E G+ PE+ KA+          +Q   +   + G D++  A T +GKT AF +PI+
Sbjct: 105 AISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 163


>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 671

 Score = 34.3 bits (75), Expect = 0.036
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +1

Query: 211 VQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315
           +QA    ++L G D++  A T  GKT AF LPIL+
Sbjct: 122 IQASTFDMVLDGADLVGRARTGQGKTLAFVLPILE 156


>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
           contains Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 368

 Score = 33.1 bits (72), Expect = 0.084
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +1

Query: 220 EAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312
           +A+P  L G  +L +A+T SGKT +F +PI+
Sbjct: 2   QAIPAALTGKSLLASADTGSGKTASFLVPII 32


>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
           similar to RNA helicases GI:3775995, GI:3775987
           [Arabidopsis thaliana]; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 610

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +1

Query: 136 AFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPIL 312
           A  + G+ PE+ KA++         +Q   +   + G D++  A T +GKT AF +PI+
Sbjct: 117 AIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175


>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
           to D-E-A-D box protein [Drosophila melanogaster]
           GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 512

 Score = 30.7 bits (66), Expect = 0.45
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = +1

Query: 160 PELGKAIEEMDWNLPTDVQAEAVPLILGGG----DVLMAAET*SGKTGAFCLPILQIV 321
           P+L KA+E M  +    VQ       +G G    D+ + + T SGKT ++ LPI+Q++
Sbjct: 30  PKLKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLL 87


>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain, PF00098: Zinc knuckle
          Length = 747

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 19/80 (23%), Positives = 39/80 (48%)
 Frame = +1

Query: 100 SNYLVTENHTMTAFEEFGVLPELGKAIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*S 279
           +N +  ++    A  +  +   L +++E+        +Q   +   L G D++  A+T +
Sbjct: 91  NNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGT 150

Query: 280 GKTGAFCLPILQIVWETLKD 339
           GKT AF +PI++ + E   D
Sbjct: 151 GKTLAFGIPIIKRLTEEAGD 170


>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
           putative ATP-dependent helicases
          Length = 1058

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 175 AIEEMDWNLPTDVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQ 315
           A++ +  N     QAEA+   L G +V +A  T SGK+  + +P+ +
Sbjct: 385 ALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVPVFE 431


>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
           similar to SP|O94761 ATP-dependent DNA helicase Q4
           (RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 911

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 208 DVQAEAVPLILGGGDVLMAAET*SGKTGAFCLPILQIVWETL 333
           D Q +A+ +ILGG   ++   T +GK+  + +P + +   TL
Sbjct: 272 DGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITL 313


>At4g05303.1 68417.m00805 hypothetical protein
          Length = 235

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 322 WETLKDMQEGKTRDGIQQISTEWTMSFLDRTTALAVTP 435
           W+T+      K+ D ++    E+ + F+DRT  +   P
Sbjct: 71  WKTITSFLVRKSTDSVRATKHEYDILFMDRTVVVQAPP 108


>At1g30680.1 68414.m03751 toprim domain-containing protein contains
           Pfam profile: PF01751 toprim domain
          Length = 709

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 383 VEICCIPSLV-FPSCISFKVSQTICSIGKQKAPVL 282
           +E C +PS   +PS  S+  S+ + S+ ++  PVL
Sbjct: 29  LEFCLLPSFASYPSSPSYSSSRQVSSVSRRFRPVL 63


>At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family
           protein low similarity to ubiquitin-conjugating
           BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
           ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 1102

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 235 ILGGGDVLMAAET*SGKTGAFCLPILQIVWET-LKDMQEGKTRDGIQQISTEWTM 396
           I G  D  + AE  SG+ GA  LP+  I + T L      + R  +   S+++T+
Sbjct: 700 IEGNSDADIYAENDSGRNGALALPLAAIEFVTRLASGIFSRARKSVDSSSSDYTV 754


>At2g07706.1 68415.m00956 expressed protein
          Length = 306

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 202 VGSSPSPRLLYLARGERRTLRKQSLCDF 119
           V SSPSPRL  L  G+R  LR+ +   F
Sbjct: 224 VPSSPSPRLRLLETGDRVFLRRLAASPF 251


>At1g22200.1 68414.m02776 expressed protein
          Length = 386

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 67  FYFHNRLLSNLSNYLVTENHTMTAFEEFGVLPELGKAIEEMDWN 198
           F FH+ LL    NY ++      AF +F   P +   ++ + WN
Sbjct: 231 FQFHDMLLFQQGNYNISHKVNRLAFGDF--FPGVVNPLDGVQWN 272


>At3g42760.1 68416.m04465 hypothetical protein similar to At3g43370,
           At2g14780, At1g34710, At1g27810, At1g25784, At4g08890
          Length = 237

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 322 WETLKDMQEGKTRDGIQQISTEWTMSFLDRTTALAVTP 435
           W+T+      K  D ++    E+ + F+DRT  +   P
Sbjct: 73  WKTITSFLVRKATDSVRATKHEYGILFMDRTVVVEAPP 110


>At1g79350.1 68414.m09247 DNA-binding protein, putative contains Pfam
            PF00628: PHD-finger domain; contains TIGRFAMS TIGR01053:
            zinc finger domain, LSD1 subclass; contains Pfam PF00271:
            Helicase conserved C-terminal domain; similar to WSSV086
            (GI:19481678)[shrimp white spot syndrome virus]; similar
            to nuclear protein Np95 (GI:17939938) [Mus musculus]
          Length = 1299

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 316  IVWETLKDMQEGKTRDGI 369
            + WE+   M EGK RDG+
Sbjct: 1114 VTWESASSMLEGKRRDGL 1131


>At1g10900.1 68414.m01252 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF02493: MORN repeat
          Length = 754

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 296 KAPVLPLHVSAAIRTSPPPNIRGTASA*TSVGRFQSISSIALPSSGR 156
           K  +L  H   ++ T+P P+IRG+     SVG  Q +  I LP + R
Sbjct: 618 KGLLLVTHEPNSVNTAPGPHIRGSTLRAFSVGE-QEVDLI-LPGTAR 662


>At1g76850.1 68414.m08943 expressed protein
          Length = 1090

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 366  SVSCFPLLHIFQSLPNNLQYRQTESTRLTASCFGCHKNITST 241
            SVS   LL + +   N L  ++ E TR+  +CF     + ST
Sbjct: 1010 SVSADDLLALTKQCSNELLQQELERTRVNTACFAESAPLEST 1051


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,482,771
Number of Sequences: 28952
Number of extensions: 194220
Number of successful extensions: 591
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -