Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I10
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom...    29   0.38 
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   2.0  
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    25   6.2  

>SPBC21C3.07c |||actin binding methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 281

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 173 LEESAGASFI*KINCRLTYILWRIMKINNLRNTEIFTFIY 292
           L+E AG   I +I C     +W I+K N   N +IF   Y
Sbjct: 112 LKEDAGEKSILEIGCGAGNTIWPILKENKNSNLKIFAVDY 151


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/76 (21%), Positives = 33/76 (43%)
 Frame = +2

Query: 323 TDHIMNVIIKIEPKEETSNEEDNDLGNYEQKIFATEKRIKEERIDYNISWSPPDSADQES 502
           T + +NV+ + +     SN +  + GNYE    +T   +K++  ++N         +  +
Sbjct: 761 TTNSLNVLKEADSIYILSNGKIVEKGNYEHLFVSTNSELKQQLSEFNDEKDTQPLPEHTT 820

Query: 503 SLPCDSGQPWPFVKIE 550
           S P       P + +E
Sbjct: 821 SYPSTQISLAPSIHVE 836


>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/58 (20%), Positives = 29/58 (50%)
 Frame = +2

Query: 278 FTFIYEVTCNI*NMSTDHIMNVIIKIEPKEETSNEEDNDLGNYEQKIFATEKRIKEER 451
           F  IY+ T ++      + +  + + EP ++ + ++     N  +K+F T KR+ + +
Sbjct: 72  FALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFGTGKRLAKRK 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,407
Number of Sequences: 5004
Number of extensions: 40915
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)