Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I10
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0043 - 412675-412798,412891-412997,413104-413197,413733-41...    32   0.30 
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97...    28   4.8  
11_03_0148 + 10762150-10762264,10762347-10762776,10764653-107647...    28   6.4  
08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034     28   6.4  
09_01_0144 - 2158924-2158962,2159180-2159315,2159393-2159499,215...    27   8.5  
04_01_0085 - 932461-932464,932656-933002,933387-935041,935084-93...    27   8.5  

>06_01_0043 -
           412675-412798,412891-412997,413104-413197,413733-413820,
           413902-413943,414117-414223,414812-414942
          Length = 230

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 15/69 (21%), Positives = 34/69 (49%)
 Frame = +2

Query: 353 IEPKEETSNEEDNDLGNYEQKIFATEKRIKEERIDYNISWSPPDSADQESSLPCDSGQPW 532
           +EP+ +  ++ED+D  +  + + A  +RIK+ER + N+      + ++      +  +  
Sbjct: 115 VEPRSDDESDEDDDDDDDTEALMAELERIKKERAEENLRKERQQAEEEAKMKEAELMRGN 174

Query: 533 PFVKIEEQG 559
           P + I   G
Sbjct: 175 PLININNAG 183


>09_01_0066 -
           978018-978500,978588-979034,979113-979412,979521-979855,
           980325-980703
          Length = 647

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 185 PIPPARGDPTSFDGPTRGSALFISEVFRRYMSR 87
           P PPAR  PT    P  G+AL+ +   RR + R
Sbjct: 52  PTPPARRRPTKPASPPTGAALYRARRCRRKLLR 84


>11_03_0148 +
           10762150-10762264,10762347-10762776,10764653-10764735,
           10764980-10765068,10765178-10765251,10765333-10765383,
           10765687-10765763,10766237-10767012
          Length = 564

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 323 TDHIMNVIIKIEPKEETSNEEDNDLGNY 406
           TD++M++ +  EP    S+   N +GNY
Sbjct: 365 TDNVMDINVNTEPNNVVSSHFTNGVGNY 392


>08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034
          Length = 760

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 356 EPKEETSNEEDNDLGNYEQKIFATEKRIKEE-RIDYNISWSPPDSADQE 499
           E ++E  + E+N++ NYE++    E+R  EE  I+YN      +S  +E
Sbjct: 529 ETEDEERDSEENEI-NYEEEADQDEEREAEENEINYNEEAEDEESETEE 576


>09_01_0144 -
           2158924-2158962,2159180-2159315,2159393-2159499,
           2159594-2160055,2162755-2162836,2164222-2164346,
           2164555-2164623,2164935-2165056,2165823-2165856
          Length = 391

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 470 WSPPDSADQESSLPCDSGQPW 532
           W  P  ++Q+S LPC+ G PW
Sbjct: 225 WMKPRPSEQKS-LPCEGGFPW 244


>04_01_0085 -
           932461-932464,932656-933002,933387-935041,935084-935882,
           936693-936707
          Length = 939

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 437 IKEERIDYNISWSPPDSADQESSLPCDSGQPW 532
           ++++ +DY   W     AD  SS  C S  PW
Sbjct: 256 LRQQHVDYTQHWDT--HADTTSSTCCHSSSPW 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,149,245
Number of Sequences: 37544
Number of extensions: 249534
Number of successful extensions: 708
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)