Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I10
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12619| Best HMM Match : DUF837 (HMM E-Value=4.9)                    29   2.1  
SB_29600| Best HMM Match : Spectrin (HMM E-Value=6.4)                  29   2.8  
SB_24007| Best HMM Match : YscO (HMM E-Value=1.6)                      29   2.8  
SB_18537| Best HMM Match : YscO (HMM E-Value=1.6)                      29   2.8  
SB_40236| Best HMM Match : YscO (HMM E-Value=1.6)                      29   2.8  
SB_26315| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_6691| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0031)           28   5.0  
SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  28   6.6  
SB_53821| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_24697| Best HMM Match : Filament (HMM E-Value=0.11)                 27   8.7  

>SB_12619| Best HMM Match : DUF837 (HMM E-Value=4.9)
          Length = 192

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 371 TSNEEDNDLGNYEQKIFATEKRIKEERIDYNI 466
           TSN +D ++ N   +I A E+R K  R +YN+
Sbjct: 65  TSNAKDLEIANLNHQISALEEREKTLRTEYNL 96


>SB_29600| Best HMM Match : Spectrin (HMM E-Value=6.4)
          Length = 141

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 371 TSNEEDNDLGNYEQKIFATEKRIKEERIDYNI 466
           TSN +D ++ N   ++ A E+R K  R +YN+
Sbjct: 72  TSNAKDLEIANLNHQVSALEEREKTLRTEYNL 103


>SB_24007| Best HMM Match : YscO (HMM E-Value=1.6)
          Length = 193

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 371 TSNEEDNDLGNYEQKIFATEKRIKEERIDYNI 466
           TSN +D ++ N   ++ A E+R K  R +YN+
Sbjct: 108 TSNAKDLEIANLNHQVSALEEREKTLRTEYNL 139


>SB_18537| Best HMM Match : YscO (HMM E-Value=1.6)
          Length = 213

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 371 TSNEEDNDLGNYEQKIFATEKRIKEERIDYNI 466
           TSN +D ++ N   ++ A E+R K  R +YN+
Sbjct: 162 TSNAKDLEIANLNHQVSALEEREKTLRTEYNL 193


>SB_40236| Best HMM Match : YscO (HMM E-Value=1.6)
          Length = 213

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 371 TSNEEDNDLGNYEQKIFATEKRIKEERIDYNI 466
           TSN +D ++ N   ++ A E+R K  R +YN+
Sbjct: 162 TSNAKDLEIANLNHQVSALEEREKTLRTEYNL 193


>SB_26315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 127 AEPRVGPSKLVGSPRAGGIGRSFI-HMKNKLSSDVYIMENY 246
           +EP+ GP +L   PR   +    I H K+ +  D +IM  Y
Sbjct: 51  SEPKRGPRRLTRLPRKADLNHETIRHNKDLIFKDYFIMYTY 91


>SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1855

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +2

Query: 362  KEETSNEEDNDLGNYEQKIFATEKRIKEERIDYNISWSPPDSADQESSLPCDSGQPWPFV 541
            K+   + +D DL +Y     +  KRI+EE   Y        ++D  +S P    + W ++
Sbjct: 1362 KKAKRSGKDKDLNSYRNLRNSASKRIREEHNRYINEVMNGIASDSVTSRPHGVKRAWSYL 1421

Query: 542  KI 547
            K+
Sbjct: 1422 KL 1423


>SB_6691| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0031)
          Length = 753

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +2

Query: 362 KEETSNEEDNDLGNYEQKIFATEKRIKEERIDYNISWSPPDSADQESSLPCDSGQPWPFV 541
           K+   + +D DL +Y     +  KRI+EE   Y        ++D  +S P    + W ++
Sbjct: 540 KKAKRSGKDKDLNSYRNLRNSASKRIREEHNRYINEVMNGIASDSVTSRPHGVKRAWSYL 599

Query: 542 KI 547
           K+
Sbjct: 600 KL 601


>SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 353 IEPKEETSNEEDNDLGNYEQKIFATEKRIKEERIDYNISWSPPDSAD 493
           +E  EE  N E+ D  N  + +    KR +EER +    +SP +  +
Sbjct: 622 VEQLEEEENAENLDSVNINEDVAGDSKRKEEERGEGGEEFSPEEGTE 668


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 187 CRFLQPGGIQLVLTAPPVAQLCSLVRYFDGIC 92
           C FL+  G+ ++++ P   Q+C+ +R   G+C
Sbjct: 882 CTFLRISGVSMLVSRPSPPQVCTFLR-IAGVC 912



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 187  CRFLQPGGIQLVLTAPPVAQLCSLVRYFDGIC 92
            C FL+  G+ ++++ P   Q+C+ +R   G+C
Sbjct: 924  CTFLRSAGVCMLVSRPSPPQVCTFLR-IAGVC 954



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 187  CRFLQPGGIQLVLTAPPVAQLCSLVRYFDGIC 92
            C FL+  G+ ++++ P   Q+C+ +R   G+C
Sbjct: 987  CTFLRSAGVCMLVSRPSPPQVCTFLR-IAGVC 1017



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 187  CRFLQPGGIQLVLTAPPVAQLCSLVRYFDGIC 92
            C FL+  G+ ++++ P   Q+C+ +R   G+C
Sbjct: 1050 CTFLRSAGVCMLVSRPSPPQVCTFLR-IAGVC 1080


>SB_53821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 383 EDNDLGNYEQKIFATEKRIKEERIDYNISWSPPDSADQESSLPCDSGQPWPFVKI 547
           +D DL +Y     +  KRI+EE   Y        ++D  +S P    + W ++K+
Sbjct: 63  KDKDLNSYRNLRNSASKRIREEHNRYINEVMNGIASDSVTSRPHGVKRAWSYLKL 117


>SB_24697| Best HMM Match : Filament (HMM E-Value=0.11)
          Length = 266

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +2

Query: 320 STDHIMNVIIKIEPKEETSNEEDNDLGNYEQKIFATEKRIKEERIDYNISWSPPDSADQE 499
           +  ++ N IIK+E K E    E+N L  +E  +   ++ I +   DY +S    D+A  E
Sbjct: 105 NVQNLNNEIIKLEAKLEALQLENNKL--HEDSL-EVKRTIGDLESDYKMSMDEKDNAHNE 161

Query: 500 S 502
           +
Sbjct: 162 A 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,924,987
Number of Sequences: 59808
Number of extensions: 292381
Number of successful extensions: 938
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)