Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I10
         (590 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y00762-1|CAA68731.1|  457|Homo sapiens protein ( Human mRNA for ...    31   2.3  
X02502-1|CAA26344.1|  457|Homo sapiens acetylcholine receptor pr...    31   2.3  
S77094-1|AAD14247.1|  457|Homo sapiens nicotinic acetylcholine r...    31   2.3  
BC006314-1|AAH06314.1|  269|Homo sapiens CHRNA1 protein protein.       31   2.3  
AC018890-1|AAY14687.1|  457|Homo sapiens unknown protein.              31   2.3  
BC105598-1|AAI05599.1|  259|Homo sapiens DDX46 protein protein.        30   5.3  
BC012304-1|AAH12304.1| 1031|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ...    30   5.3  
AF106680-1|AAD43033.1| 1031|Homo sapiens RNA helicase protein.         30   5.3  
AB018344-1|BAA34521.2| 1058|Homo sapiens KIAA0801 protein protein.     30   5.3  
AL354733-9|CAI16019.1|  428|Homo sapiens heterogeneous nuclear r...    30   7.0  

>Y00762-1|CAA68731.1|  457|Homo sapiens protein ( Human mRNA for
           muscle acetylcholine receptor alpha-subunit. ).
          Length = 457

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 413 KIFATEKRIKEERIDYNISWSPPD 484
           +I  T  R+K++ +DYN+ W+P D
Sbjct: 68  QIVTTNVRLKQQWVDYNLKWNPDD 91


>X02502-1|CAA26344.1|  457|Homo sapiens acetylcholine receptor
           protein.
          Length = 457

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 413 KIFATEKRIKEERIDYNISWSPPD 484
           +I  T  R+K++ +DYN+ W+P D
Sbjct: 68  QIVTTNVRLKQQWVDYNLKWNPDD 91


>S77094-1|AAD14247.1|  457|Homo sapiens nicotinic acetylcholine
           receptor alpha subunit|AChR protein.
          Length = 457

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 413 KIFATEKRIKEERIDYNISWSPPD 484
           +I  T  R+K++ +DYN+ W+P D
Sbjct: 68  QIVTTNVRLKQQWVDYNLKWNPDD 91


>BC006314-1|AAH06314.1|  269|Homo sapiens CHRNA1 protein protein.
          Length = 269

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 413 KIFATEKRIKEERIDYNISWSPPD 484
           +I  T  R+K++ +DYN+ W+P D
Sbjct: 68  QIVTTNVRLKQQWVDYNLKWNPDD 91


>AC018890-1|AAY14687.1|  457|Homo sapiens unknown protein.
          Length = 457

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 413 KIFATEKRIKEERIDYNISWSPPD 484
           +I  T  R+K++ +DYN+ W+P D
Sbjct: 68  QIVTTNVRLKQQWVDYNLKWNPDD 91


>BC105598-1|AAI05599.1|  259|Homo sapiens DDX46 protein protein.
          Length = 259

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 350 KIEPKEETSNEEDNDLGNYEQKIFATEKRIKEERID 457
           K + K++  +E++ D GN++Q     E R ++ER++
Sbjct: 133 KKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVE 168


>BC012304-1|AAH12304.1| 1031|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 46 protein.
          Length = 1031

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 350 KIEPKEETSNEEDNDLGNYEQKIFATEKRIKEERID 457
           K + K++  +E++ D GN++Q     E R ++ER++
Sbjct: 133 KKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVE 168


>AF106680-1|AAD43033.1| 1031|Homo sapiens RNA helicase protein.
          Length = 1031

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 350 KIEPKEETSNEEDNDLGNYEQKIFATEKRIKEERID 457
           K + K++  +E++ D GN++Q     E R ++ER++
Sbjct: 133 KKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVE 168


>AB018344-1|BAA34521.2| 1058|Homo sapiens KIAA0801 protein protein.
          Length = 1058

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 350 KIEPKEETSNEEDNDLGNYEQKIFATEKRIKEERID 457
           K + K++  +E++ D GN++Q     E R ++ER++
Sbjct: 159 KKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVE 194


>AL354733-9|CAI16019.1|  428|Homo sapiens heterogeneous nuclear
           ribonucleoprotein K protein.
          Length = 428

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 407 EQKIFATEKRIKEERIDYNISWSPPDSADQESSL 508
           E +I    K IK  R DYN S S PDS+  E  L
Sbjct: 44  ELRILLQSKNIKALRTDYNASVSVPDSSGPERIL 77


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,499,481
Number of Sequences: 237096
Number of extensions: 1502839
Number of successful extensions: 3910
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3910
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)