Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I10
(590 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 26 0.24
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.3
AB252421-1|BAE80739.1| 122|Apis mellifera GB15078 protein. 23 1.7
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 23 2.2
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 2.2
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.0
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.0
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 3.9
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 5.2
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 5.2
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 26.2 bits (55), Expect = 0.24
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 401 NYEQKIFATEKRIKEERIDYNISWSPPD 484
N + +I T +++E DY + W+P D
Sbjct: 61 NLKNQIMTTNVWVEQEWNDYKLKWNPDD 88
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 407 EQKIFATEKRIKEERIDYNISWS 475
+ +I T +K E +DYN+ W+
Sbjct: 29 KNQILTTNAWLKLEWVDYNLQWN 51
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 407 EQKIFATEKRIKEERIDYNISWS 475
+ +I T +K E +DYN+ W+
Sbjct: 29 KNQILTTNAWLKLEWVDYNLQWN 51
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 407 EQKIFATEKRIKEERIDYNISWS 475
+ +I T +K E +DYN+ W+
Sbjct: 29 KNQILTTNAWLKLEWVDYNLQWN 51
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 407 EQKIFATEKRIKEERIDYNISWS 475
+ +I T +K E +DYN+ W+
Sbjct: 29 KNQILTTNAWLKLEWVDYNLQWN 51
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 407 EQKIFATEKRIKEERIDYNISWS 475
+ +I T +K E +DYN+ W+
Sbjct: 29 KNQILTTNAWLKLEWVDYNLQWN 51
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 407 EQKIFATEKRIKEERIDYNISWS 475
+ +I T +K E +DYN+ W+
Sbjct: 29 KNQILTTNAWLKLEWVDYNLQWN 51
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 1.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 407 EQKIFATEKRIKEERIDYNISWS 475
+ +I T +K E +DYN+ W+
Sbjct: 97 KNQILTTNAWLKLEWVDYNLQWN 119
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 1.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 407 EQKIFATEKRIKEERIDYNISWS 475
+ +I T +K E +DYN+ W+
Sbjct: 97 KNQILTTNAWLKLEWVDYNLQWN 119
>AB252421-1|BAE80739.1| 122|Apis mellifera GB15078 protein.
Length = 122
Score = 23.4 bits (48), Expect = 1.7
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -2
Query: 571 QLFNSLFFYFHEWP 530
+L++ FF HEWP
Sbjct: 62 ELYHHKFFQVHEWP 75
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 23.0 bits (47), Expect = 2.2
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +2
Query: 356 EPKEETSNEEDNDLGN---YEQKIFATEKRIKEER 451
+PKEET +++D++ N QK F +ER
Sbjct: 80 KPKEETDDKDDDESDNENIKSQKEFPNSSSSDDER 114
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.0 bits (47), Expect = 2.2
Identities = 7/28 (25%), Positives = 14/28 (50%)
Frame = +2
Query: 401 NYEQKIFATEKRIKEERIDYNISWSPPD 484
N + +I T +++ DY + W P +
Sbjct: 65 NLKNQIMTTNLWVEQSWYDYKLKWDPKE 92
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 3.0
Identities = 7/28 (25%), Positives = 14/28 (50%)
Frame = +2
Query: 401 NYEQKIFATEKRIKEERIDYNISWSPPD 484
N + +I T +++ DY + W P +
Sbjct: 69 NLKNQIMTTNLWVEQSWYDYKLRWEPKE 96
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 3.0
Identities = 7/28 (25%), Positives = 14/28 (50%)
Frame = +2
Query: 401 NYEQKIFATEKRIKEERIDYNISWSPPD 484
N + +I T +++ DY + W P +
Sbjct: 69 NLKNQIMTTNLWVEQSWYDYKLRWEPKE 96
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 22.2 bits (45), Expect = 3.9
Identities = 6/28 (21%), Positives = 15/28 (53%)
Frame = +2
Query: 401 NYEQKIFATEKRIKEERIDYNISWSPPD 484
N + ++ T +++ DY + W+P +
Sbjct: 74 NLKNQVMTTNVWVEQRWNDYKLKWNPEE 101
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.8 bits (44), Expect = 5.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 193 SSCRFLQPGGIQLVLTAPPVAQLCSLVRYFDGIC 92
S F+Q G + +V+ VA S YF IC
Sbjct: 491 SKMYFIQEGIVDIVMANGEVATSLSDGSYFGEIC 524
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.8 bits (44), Expect = 5.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 193 SSCRFLQPGGIQLVLTAPPVAQLCSLVRYFDGIC 92
S F+Q G + +V+ VA S YF IC
Sbjct: 459 SKMYFIQEGIVDIVMANGEVATSLSDGSYFGEIC 492
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,937
Number of Sequences: 438
Number of extensions: 3118
Number of successful extensions: 18
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -