Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_I10
(590 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g24690.1 68417.m03534 ubiquitin-associated (UBA)/TS-N domain-... 29 1.8
At1g04090.1 68414.m00398 expressed protein 29 1.8
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 28 4.1
At2g27350.3 68415.m03293 OTU-like cysteine protease family prote... 28 5.4
At2g27350.2 68415.m03292 OTU-like cysteine protease family prote... 28 5.4
At2g27350.1 68415.m03291 OTU-like cysteine protease family prote... 28 5.4
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 28 5.4
At1g13220.1 68414.m01533 nuclear matrix constituent protein-rela... 28 5.4
At5g27710.1 68418.m03324 expressed protein 27 7.1
At4g00070.1 68417.m00007 zinc finger protein-related contains si... 27 7.1
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051... 27 7.1
At3g06090.1 68416.m00699 hypothetical protein 27 9.4
>At4g24690.1 68417.m03534 ubiquitin-associated (UBA)/TS-N
domain-containing protein / octicosapeptide/Phox/Bemp1
(PB1) domain-containing protein contains Pfam profiles
PF00627: Ubiquitin-associated (UBA)/TS-N domain,
PF00569: Zinc finger ZZ type domain, PF00564: PB1 domain
Length = 704
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/80 (26%), Positives = 38/80 (47%)
Frame = +2
Query: 314 NMSTDHIMNVIIKIEPKEETSNEEDNDLGNYEQKIFATEKRIKEERIDYNISWSPPDSAD 493
N+S D +++ E + + +DNDL + T +R+K +I+ N S +A
Sbjct: 47 NLSADAELSLTYSDEDGDVVALVDDNDLFD------VTNQRLKFLKINVNAGVSTNSAAP 100
Query: 494 QESSLPCDSGQPWPFVKIEE 553
+ S +G P P KI++
Sbjct: 101 ESSGSSTPAGMPNPVSKIQK 120
>At1g04090.1 68414.m00398 expressed protein
Length = 572
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 428 EKRIKEERIDYNISWSPPDSADQESSLPCDSGQPW 532
EK E +D+ + WS DSA+ E S + G W
Sbjct: 117 EKPALVEPVDFTLVWSSNDSAENECSSKSECGYFW 151
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Frame = +2
Query: 338 NVIIKIEPKEETSNEEDNDLGNY----EQKIFATEKRIKEERIDYNISWSPPDSADQES- 502
NV+ K E ++ET E + D + QK K KEER N + D AD S
Sbjct: 436 NVVSKEEDEDETEVEIEGDTAEFSEFDNQKSTGRNKEAKEERNKQN---AGNDMADDTSK 492
Query: 503 -SLPCDSGQP 529
+P + G P
Sbjct: 493 VQIPGEGGNP 502
>At2g27350.3 68415.m03293 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 506
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Frame = +2
Query: 314 NMSTDHIMNVIIKIEPKEETSNEEDNDL---GNYEQKIFATEKRIKEE-----RIDYNIS 469
++S H+ +K K + ++ DN L G + + TEK I+ R +Y +
Sbjct: 352 SLSGRHVDKEQVKAAIKAQQEHQIDNALLAEGRFYSDLELTEKEIERSVMEASRAEYLME 411
Query: 470 WSPPDSADQESS 505
WS P +ESS
Sbjct: 412 WSKPRIGPKESS 423
>At2g27350.2 68415.m03292 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 505
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Frame = +2
Query: 314 NMSTDHIMNVIIKIEPKEETSNEEDNDL---GNYEQKIFATEKRIKEE-----RIDYNIS 469
++S H+ +K K + ++ DN L G + + TEK I+ R +Y +
Sbjct: 352 SLSGRHVDKEQVKAAIKAQQEHQIDNALLAEGRFYSDLELTEKEIERSVMEASRAEYLME 411
Query: 470 WSPPDSADQESS 505
WS P +ESS
Sbjct: 412 WSKPRIGPKESS 423
>At2g27350.1 68415.m03291 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 505
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Frame = +2
Query: 314 NMSTDHIMNVIIKIEPKEETSNEEDNDL---GNYEQKIFATEKRIKEE-----RIDYNIS 469
++S H+ +K K + ++ DN L G + + TEK I+ R +Y +
Sbjct: 352 SLSGRHVDKEQVKAAIKAQQEHQIDNALLAEGRFYSDLELTEKEIERSVMEASRAEYLME 411
Query: 470 WSPPDSADQESS 505
WS P +ESS
Sbjct: 412 WSKPRIGPKESS 423
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 350 KIEPKEETSNEEDNDLGNYEQKIFATEKRIK 442
K++ KEE+ E+ +L E+K+ EK++K
Sbjct: 271 KLQGKEESITEQKRNLNQREEKVNEIEKKLK 301
>At1g13220.1 68414.m01533 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 391
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 350 KIEPKEETSNEEDNDLGNYEQKIFATEKRIK 442
K++ KEE+ E+ +L E+K+ EK++K
Sbjct: 284 KLQGKEESITEQKRNLNQREEKVNEIEKKLK 314
>At5g27710.1 68418.m03324 expressed protein
Length = 380
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 413 KIFATEKRIKEERIDYNISWSPPDSADQESSLPCDSG 523
KI A E+R K E + ++ W PP+S + + L DSG
Sbjct: 97 KIDAVERRSKFEE-ENSLIWWPPESVLELARLAVDSG 132
>At4g00070.1 68417.m00007 zinc finger protein-related contains
similarity to zinc finger proteins (C3HC4-type RING
finger)
Length = 200
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 326 DHIMNVIIKIEPKEETSNEEDNDLGNYEQKIFATEKRIKEER 451
D + + KI P+EET N D D ++ + KR K+ R
Sbjct: 28 DEFLFDLNKIPPREETVNSSDEDFADHLHRRNQATKRKKKLR 69
>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
Krr1 family
Length = 638
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 356 EPKEETSNEEDNDLGNYEQKIFATEKRIKEERID 457
E + ET +E D+DLGN E + + IK ++ D
Sbjct: 57 EEEPETESEPDSDLGNPESNLKFVDLLIKVKKKD 90
>At3g06090.1 68416.m00699 hypothetical protein
Length = 79
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 245 MKINNLRNTEIFTFIYEVTCNI*NMSTDHIMNVIIKIEPKEETSNEED-NDLGNYEQK 415
MK+ L +F + +TC+I M++ H N + + + E+ N+ GNYE+K
Sbjct: 1 MKMKKLLKV-VFLLVAYLTCSI-AMASYHGCNRVAEKATRMNVVGEDSRNEFGNYEEK 56
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,553,128
Number of Sequences: 28952
Number of extensions: 205951
Number of successful extensions: 658
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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