Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I09
         (266 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   1.8  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    24   4.1  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    23   9.6  

>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 145 HHGNNLNTNASQEW 104
           HHGN  N+ ++Q W
Sbjct: 622 HHGNTYNSGSAQSW 635


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 108 SWLALVLRLLPWWPF 152
           SW  ++   LP+WPF
Sbjct: 46  SWYTVLWAFLPFWPF 60


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 258 HRRSIASELLKPQLQGTPA*QPH-KALVTS 172
           H R++A+++L   L+GT   +P  K +VTS
Sbjct: 634 HERTVATDVLFGLLKGTVLKRPDLKLIVTS 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 797,121
Number of Sequences: 5004
Number of extensions: 9210
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)