Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I09
         (266 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50739-2|CAA90602.2|  381|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       25   5.6  
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical...    25   9.7  
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ...    25   9.7  
AF098985-1|AAC67419.2|  882|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z50739-2|CAA90602.2|  381|Caenorhabditis elegans Hypothetical
           protein F13D2.3 protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +3

Query: 108 SWLALVLRLLPWWPFSSVV*HY 173
           S++ ++ RL+P+WPF +V+ HY
Sbjct: 229 SYVRMMSRLIPFWPF-TVLNHY 249


>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical
           protein C25G4.5 protein.
          Length = 1263

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 11  ENKLNVKFEPGELREAARTFEEARGKIK 94
           ENK +V FE G L  +   F+++ GKI+
Sbjct: 835 ENKPHVAFEMGLLGNSGMFFKKSYGKIR 862


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 11  ENKLNVKFEPGELREAARTFEEARGKIK 94
           ENK +V FE G L  +   F+++ GKI+
Sbjct: 835 ENKPHVAFEMGLLGNSGMFFKKSYGKIR 862


>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
            protein Y18D10A.13 protein.
          Length = 2417

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 102  HHSWLALVLRLLPW 143
            H  WL  V+++LPW
Sbjct: 1505 HEMWLQFVVQILPW 1518


>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
            protein protein.
          Length = 2417

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 102  HHSWLALVLRLLPW 143
            H  WL  V+++LPW
Sbjct: 1505 HEMWLQFVVQILPW 1518


>AF098985-1|AAC67419.2|  882|Caenorhabditis elegans Hypothetical
           protein C08G5.1 protein.
          Length = 882

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 5   EGENKLNVKFEPGELREAARTFEEARGKIKKYTP 106
           EG N L +    GE+ +  RTF   + K+ K  P
Sbjct: 149 EGINDLKLDKNVGEVEKQLRTFVSDQEKLSKIDP 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,501,526
Number of Sequences: 27780
Number of extensions: 52773
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)