Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_I09
         (266 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78940.1 68414.m09203 protein kinase family protein contains ...    27   1.7  
At5g52410.2 68418.m06502 expressed protein                             26   3.0  
At5g52410.1 68418.m06503 expressed protein                             26   3.0  
At3g03200.1 68416.m00316 no apical meristem (NAM) family protein...    25   9.1  

>At1g78940.1 68414.m09203 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 680

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 8   GENKLNVKFEPGELREAARTFEEARGKIKKYT 103
           G N+L +KF   +    + TF E  G+   Y+
Sbjct: 215 GSNRLGIKFSDPDFLNESSTFSEESGRTSSYS 246


>At5g52410.2 68418.m06502 expressed protein
          Length = 761

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 29  KFEPGELREAARTFEEARGKIKKY 100
           K E    RE A+  EEARG+ +KY
Sbjct: 600 KDEARRAREQAKVLEEARGRWEKY 623


>At5g52410.1 68418.m06503 expressed protein
          Length = 510

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 29  KFEPGELREAARTFEEARGKIKKY 100
           K E    RE A+  EEARG+ +KY
Sbjct: 349 KDEARRAREQAKVLEEARGRWEKY 372


>At3g03200.1 68416.m00316 no apical meristem (NAM) family protein
           similar to NAC2 (GI:6456751) {Arabidopsis thaliana}
          Length = 479

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 163 TTEEKGHHGNNLNTN 119
           T E+ G HGNN N N
Sbjct: 339 TDEDPGFHGNNTNDN 353


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,343,172
Number of Sequences: 28952
Number of extensions: 51568
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 12,070,560
effective HSP length: 67
effective length of database: 10,130,776
effective search space used: 212746296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)